Literature DB >> 24243317

SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Lucio Ferella1, Claudio Luchinat, Enrico Ravera, Antonio Rosato.   

Abstract

We have proposed solid state NMR (SSNMR) of sedimented solutes as a novel approach to sample preparation for biomolecular SSNMR without crystallization or other sample manipulations. The biomolecules are confined by high gravity--obtained by centrifugal forces either directly in a SSNMR rotor or in a ultracentrifugal device--into a hydrated non-crystalline solid suitable for SSNMR investigations. When gravity is removed, the sample reverts to solution and can be treated as any solution NMR sample. We here describe a simple web tool to calculate the relevant parameters for the success of the experiment.

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Year:  2013        PMID: 24243317     DOI: 10.1007/s10858-013-9795-x

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  114 in total

1.  Accurate calculation of the density of proteins.

Authors:  M L Quillin; B W Matthews
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-07

2.  NMR analysis of a 900K GroEL GroES complex.

Authors:  Jocelyne Fiaux; Eric B Bertelsen; Arthur L Horwich; Kurt Wüthrich
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

3.  Constraints on supramolecular structure in amyloid fibrils from two-dimensional solid-state NMR spectroscopy with uniform isotopic labeling.

Authors:  Robert Tycko; Yoshitaka Ishii
Journal:  J Am Chem Soc       Date:  2003-06-04       Impact factor: 15.419

4.  Measurement of site-specific 13C spin-lattice relaxation in a crystalline protein.

Authors:  Józef R Lewandowski; Julien Sein; Hans Jürgen Sass; Stephan Grzesiek; Martin Blackledge; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

5.  13C- 13C NOESY spectra of a 480 kDa protein: solution NMR of ferritin.

Authors:  Manolis Matzapetakis; Paola Turano; Elizabeth C Theil; Ivano Bertini
Journal:  J Biomol NMR       Date:  2007-06-07       Impact factor: 2.835

6.  Simultaneous acquisition of homonuclear and heteronuclear long-distance contacts with time-shared third spin assisted recoupling.

Authors:  Jonathan M Lamley; Józef R Lewandowski
Journal:  J Magn Reson       Date:  2012-03-28       Impact factor: 2.229

7.  Solid-state and solution NMR studies of the CAP-Gly domain of mammalian dynactin and its interaction with microtubules.

Authors:  Shangjin Sun; Amanda Siglin; John C Williams; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

8.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

9.  NMR techniques used with very large biological macromolecules in solution.

Authors:  Gerhard Wider
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

10.  Molecular dynamics of proteorhodopsin in lipid bilayers by solid-state NMR.

Authors:  Jun Yang; Lubica Aslimovska; Clemens Glaubitz
Journal:  J Am Chem Soc       Date:  2011-03-14       Impact factor: 15.419

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  5 in total

1.  Dynamics in the solid-state: perspectives for the investigation of amyloid aggregates, membrane proteins and soluble protein complexes.

Authors:  Rasmus Linser; Riddhiman Sarkar; Alexey Krushelnitzky; Andi Mainz; Bernd Reif
Journal:  J Biomol NMR       Date:  2014-03-05       Impact factor: 2.835

2.  On the use of ultracentrifugal devices for routine sample preparation in biomolecular magic-angle-spinning NMR.

Authors:  Abhishek Mandal; Jennifer C Boatz; Travis B Wheeler; Patrick C A van der Wel
Journal:  J Biomol NMR       Date:  2017-02-22       Impact factor: 2.835

3.  Solid-state NMR of the Yersinia pestis outer membrane protein Ail in lipid bilayer nanodiscs sedimented by ultracentrifugation.

Authors:  Yi Ding; L Miya Fujimoto; Yong Yao; Francesca M Marassi
Journal:  J Biomol NMR       Date:  2015-01-13       Impact factor: 2.835

4.  Characterization of nucleosome sediments for protein interaction studies by solid-state NMR spectroscopy.

Authors:  Ulric B le Paige; ShengQi Xiang; Marco M R M Hendrix; Yi Zhang; Gert E Folkers; Markus Weingarth; Alexandre M J J Bonvin; Tatiana G Kutateladze; Ilja K Voets; Marc Baldus; Hugo van Ingen
Journal:  Magn Reson (Gott)       Date:  2021-04-21

Review 5.  Facing and Overcoming Sensitivity Challenges in Biomolecular NMR Spectroscopy.

Authors:  Jan-Henrik Ardenkjaer-Larsen; Gregory S Boebinger; Arnaud Comment; Simon Duckett; Arthur S Edison; Frank Engelke; Christian Griesinger; Robert G Griffin; Christian Hilty; Hidaeki Maeda; Giacomo Parigi; Thomas Prisner; Enrico Ravera; Jan van Bentum; Shimon Vega; Andrew Webb; Claudio Luchinat; Harald Schwalbe; Lucio Frydman
Journal:  Angew Chem Int Ed Engl       Date:  2015-07-01       Impact factor: 15.336

  5 in total

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