Literature DB >> 17406304

Isotope labeling strategies for the study of high-molecular-weight proteins by solution NMR spectroscopy.

Vitali Tugarinov1, Voula Kanelis, Lewis E Kay.   

Abstract

The development of isotope labeling methodology has had a significant impact on NMR studies of high-molecular-weight proteins and macromolecular complexes. Here we review some of this methodology that has been developed and used in our laboratory. In particular, experimental protocols are described for the production of highly deuterated, uniformly 15N- and 13C-labeled samples of large proteins, with optional incorporation of selective isotope labels into methyl groups of isoleucine, leucine and valine residues. Various types of methyl labeling schemes are assessed, and the utility of different methyl labeling strategies is highlighted for studies ranging from protein structure determination to the investigation of side-chain dynamics. In the case of malate synthase G (MSG), the time frame of the whole preparation, including the protein refolding step, is about 70 h.

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Year:  2006        PMID: 17406304     DOI: 10.1038/nprot.2006.101

Source DB:  PubMed          Journal:  Nat Protoc        ISSN: 1750-2799            Impact factor:   13.491


  216 in total

1.  NMR studies of large protein systems.

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Journal:  Methods Mol Biol       Date:  2012

2.  Structural basis for capping protein sequestration by myotrophin (V-1).

Authors:  Adam Zwolak; Ikuko Fujiwara; John A Hammer; Nico Tjandra
Journal:  J Biol Chem       Date:  2010-06-10       Impact factor: 5.157

3.  Automated sequence- and stereo-specific assignment of methyl-labeled proteins by paramagnetic relaxation and methyl-methyl nuclear Overhauser enhancement spectroscopy.

Authors:  Vincenzo Venditti; Nicolas L Fawzi; G Marius Clore
Journal:  J Biomol NMR       Date:  2011-09-04       Impact factor: 2.835

4.  Estimating side-chain order in methyl-protonated, perdeuterated proteins via multiple-quantum relaxation violated coherence transfer NMR spectroscopy.

Authors:  Hechao Sun; Raquel Godoy-Ruiz; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2012-03       Impact factor: 2.835

5.  Potassium channel gating: not an open and shut case.

Authors:  Raymond S Norton; Jacqueline M Gulbis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-14       Impact factor: 11.205

6.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

7.  Protein-ice interaction of an antifreeze protein observed with solid-state NMR.

Authors:  Ansgar B Siemer; Kuo-Ying Huang; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-30       Impact factor: 11.205

8.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

9.  Probing non-specific interactions of Ca²⁺-calmodulin in E. coli lysate.

Authors:  Michael P Latham; Lewis E Kay
Journal:  J Biomol NMR       Date:  2013-01-17       Impact factor: 2.835

10.  Backbone and methyl resonance assignments of the 42 kDa human Hsc70 nucleotide binding domain in the ADP state.

Authors:  Erik R P Zuiderweg; Jason E Gestwicki
Journal:  Biomol NMR Assign       Date:  2016-10-03       Impact factor: 0.746

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