Literature DB >> 19779834

Characterization of different water pools in solid-state NMR protein samples.

Anja Böckmann1, Carole Gardiennet, René Verel, Andreas Hunkeler, Antoine Loquet, Guido Pintacuda, Lyndon Emsley, Beat H Meier, Anne Lesage.   

Abstract

We observed and characterized two distinct signals originating from different pools of water protons in solid-state NMR protein samples, namely from crystal water which exchanges polarization with the protein (on the NMR timescale) and is located in the protein-rich fraction at the periphery of the magic-angle spinning (MAS) sample container, and supernatant water located close to the axis of the sample container. The polarization transfer between the water and the protein can be probed by two-dimensional exchange spectroscopy, and we show that the supernatant water does not interact with protein on the timescale of the experiments. The two water pools have different spectroscopic properties, including resonance frequency, longitudinal, transverse and rotating frame relaxation times. The supernatant water can be removed almost completely physically or can be frozen selectively. Both measures lead to an enhancement of the quality factor of the probe circuit, accompanied by an improvement of the experimental signal/noise, and greatly simplify solvent-suppression by substantially reducing the water signal. We also present a tool, which allows filling solid-state NMR sample containers in a more efficient manner, greatly reducing the amount of supernatant water and maximizing signal/noise.

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Year:  2009        PMID: 19779834     DOI: 10.1007/s10858-009-9374-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  41 in total

1.  NMR Chemical Shifts of Common Laboratory Solvents as Trace Impurities.

Authors:  Hugo E. Gottlieb; Vadim Kotlyar; Abraham Nudelman
Journal:  J Org Chem       Date:  1997-10-17       Impact factor: 4.354

2.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

3.  HR-MAS of cells: A "cellular water shift" due to water-protein interactions?

Authors:  Silvio Aime; Erik Bruno; Claudia Cabella; Sebastiano Colombatto; Giuseppe Digilio; Valentina Mainero
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

4.  Quantitative analysis of backbone dynamics in a crystalline protein from nitrogen-15 spin-lattice relaxation.

Authors:  Nicolas Giraud; Martin Blackledge; Maurice Goldman; Anja Böckmann; Anne Lesage; François Penin; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

5.  Conformational dynamics of substrate in the active site of cytochrome P450 BM-3/NPG complex: insights from NMR order parameters.

Authors:  Krishna Pratap Ravindranathan; Emilio Gallicchio; Ann E McDermott; Ronald M Levy
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

Review 6.  High-resolution solid-state MAS NMR of proteins-Crh as an example.

Authors:  Anja Böckmann
Journal:  Magn Reson Chem       Date:  2007-12-17       Impact factor: 2.447

7.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

8.  Structural rearrangements of membrane proteins probed by water-edited solid-state NMR spectroscopy.

Authors:  Christian Ader; Robert Schneider; Karsten Seidel; Manuel Etzkorn; Stefan Becker; Marc Baldus
Journal:  J Am Chem Soc       Date:  2009-01-14       Impact factor: 15.419

9.  NMR evidence of a sharp change in a measure of local order in deeply supercooled confined water.

Authors:  F Mallamace; C Corsaro; M Broccio; C Branca; N González-Segredo; J Spooren; S-H Chen; H E Stanley
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-27       Impact factor: 11.205

10.  High-sensitivity observation of dipolar exchange and NOEs between exchangeable protons in proteins by 3D solid-state NMR spectroscopy.

Authors:  Eric K Paulson; Corey R Morcombe; Vadim Gaponenko; Barbara Dancheck; R Andrew Byrd; Kurt W Zilm
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

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  84 in total

1.  Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins.

Authors:  Daniela Lalli; Paul Schanda; Anup Chowdhury; Joren Retel; Matthias Hiller; Victoria A Higman; Lieselotte Handel; Vipin Agarwal; Bernd Reif; Barth van Rossum; Umit Akbey; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2011-10-25       Impact factor: 2.835

2.  Simultaneous acquisition of PAR and PAIN spectra.

Authors:  Anders B Nielsen; Kathrin Székely; Julia Gath; Matthias Ernst; Niels Chr Nielsen; Beat H Meier
Journal:  J Biomol NMR       Date:  2012-02-28       Impact factor: 2.835

Review 3.  Prions: En route from structural models to structures.

Authors:  Anja Böckmann; Beat H Meier
Journal:  Prion       Date:  2010-04-05       Impact factor: 3.931

4.  Protein-ice interaction of an antifreeze protein observed with solid-state NMR.

Authors:  Ansgar B Siemer; Kuo-Ying Huang; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-30       Impact factor: 11.205

5.  Protein resonance assignment at MAS frequencies approaching 100 kHz: a quantitative comparison of J-coupling and dipolar-coupling-based transfer methods.

Authors:  Susanne Penzel; Albert A Smith; Vipin Agarwal; Andreas Hunkeler; Mai-Liis Org; Ago Samoson; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2015-08-13       Impact factor: 2.835

6.  Water Distribution, Dynamics, and Interactions with Alzheimer's β-Amyloid Fibrils Investigated by Solid-State NMR.

Authors:  Tuo Wang; Hyunil Jo; William F DeGrado; Mei Hong
Journal:  J Am Chem Soc       Date:  2017-04-21       Impact factor: 15.419

7.  Sensitivity and resolution of proton detected spectra of a deuterated protein at 40 and 60 kHz magic-angle-spinning.

Authors:  Andrew J Nieuwkoop; W Trent Franks; Kristina Rehbein; Anne Diehl; Ümit Akbey; Frank Engelke; Lyndon Emsley; Guido Pintacuda; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2015-02-08       Impact factor: 2.835

8.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

9.  Efficient band-selective homonuclear CO-CA cross-polarization in protonated proteins.

Authors:  Veniamin Chevelkov; Chaowei Shi; Hannes Klaus Fasshuber; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2013-08-08       Impact factor: 2.835

10.  TmDOTP: An NMR-based thermometer for magic angle spinning NMR experiments.

Authors:  Dongyu Zhang; Boris Itin; Ann E McDermott
Journal:  J Magn Reson       Date:  2019-08-16       Impact factor: 2.229

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