Literature DB >> 28229262

On the use of ultracentrifugal devices for routine sample preparation in biomolecular magic-angle-spinning NMR.

Abhishek Mandal1, Jennifer C Boatz1, Travis B Wheeler2, Patrick C A van der Wel3.   

Abstract

A number of recent advances in the field of magic-angle-spinning (MAS) solid-state NMR have enabled its application to a range of biological systems of ever increasing complexity. To retain biological relevance, these samples are increasingly studied in a hydrated state. At the same time, experimental feasibility requires the sample preparation process to attain a high sample concentration within the final MAS rotor. We discuss these considerations, and how they have led to a number of different approaches to MAS NMR sample preparation. We describe our experience of how custom-made (or commercially available) ultracentrifugal devices can facilitate a simple, fast and reliable sample preparation process. A number of groups have since adopted such tools, in some cases to prepare samples for sedimentation-style MAS NMR experiments. Here we argue for a more widespread adoption of their use for routine MAS NMR sample preparation.

Entities:  

Keywords:  Hydration; MAS NMR; Sample packing; Sedimentation; Ultracentrifugation

Mesh:

Substances:

Year:  2017        PMID: 28229262      PMCID: PMC5445385          DOI: 10.1007/s10858-017-0089-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  95 in total

1.  Assembling a Correctly Folded and Functional Heptahelical Membrane Protein by Protein Trans-splicing.

Authors:  Michaela Mehler; Carl Elias Eckert; Alena Busche; Jennifer Kulhei; Jonas Michaelis; Johanna Becker-Baldus; Josef Wachtveitl; Volker Dötsch; Clemens Glaubitz
Journal:  J Biol Chem       Date:  2015-09-24       Impact factor: 5.157

2.  Solid-state NMR sequential assignments of the N-terminal domain of HpDnaB helicase.

Authors:  Thomas Wiegand; Carole Gardiennet; Francesco Ravotti; Alexandre Bazin; Britta Kunert; Denis Lacabanne; Riccardo Cadalbert; Peter Güntert; Laurent Terradot; Anja Böckmann; Beat H Meier
Journal:  Biomol NMR Assign       Date:  2015-08-18       Impact factor: 0.746

3.  Probing water accessibility in HET-s(218-289) amyloid fibrils by solid-state NMR.

Authors:  Hélène Van Melckebeke; Paul Schanda; Julia Gath; Christian Wasmer; René Verel; Adam Lange; Beat H Meier; Anja Böckmann
Journal:  J Mol Biol       Date:  2010-11-19       Impact factor: 5.469

4.  A novel low-E field coil to minimize heating of biological samples in solid-state multinuclear NMR experiments.

Authors:  Baudouin Dillmann; Karim Elbayed; Heinz Zeiger; Marie-Catherine Weingertner; Martial Piotto; Frank Engelke
Journal:  J Magn Reson       Date:  2007-03-31       Impact factor: 2.229

5.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

6.  High-resolution solid-state NMR studies on uniformly [13C,15N]-labeled ubiquitin.

Authors:  Karsten Seidel; Manuel Etzkorn; Henrike Heise; Stefan Becker; Marc Baldus
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

7.  Simple centrifugation method for efficient pelleting of both small and large unilamellar vesicles that allows convenient measurement of protein binding.

Authors:  D Tortorella; N D Ulbrandt; E London
Journal:  Biochemistry       Date:  1993-09-07       Impact factor: 3.162

8.  Structural characterization of GNNQQNY amyloid fibrils by magic angle spinning NMR.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

9.  Solid-state NMR study of amyloid nanocrystals and fibrils formed by the peptide GNNQQNY from yeast prion protein Sup35p.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-03-31       Impact factor: 15.419

10.  Molecular response of the lipid headgroup to bilayer hydration monitored by 2H-NMR.

Authors:  A S Ulrich; A Watts
Journal:  Biophys J       Date:  1994-05       Impact factor: 4.033

View more
  15 in total

1.  Protofilament Structure and Supramolecular Polymorphism of Aggregated Mutant Huntingtin Exon 1.

Authors:  Jennifer C Boatz; Talia Piretra; Alessia Lasorsa; Irina Matlahov; James F Conway; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2020-06-27       Impact factor: 5.469

2.  Methionine oxidized apolipoprotein A-I at the crossroads of HDL biogenesis and amyloid formation.

Authors:  Andrzej Witkowski; Gary K L Chan; Jennifer C Boatz; Nancy J Li; Ayuka P Inoue; Jaclyn C Wong; Patrick C A van der Wel; Giorgio Cavigiolio
Journal:  FASEB J       Date:  2018-01-17       Impact factor: 5.191

Review 3.  Insights into protein misfolding and aggregation enabled by solid-state NMR spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Solid State Nucl Magn Reson       Date:  2017-10-04       Impact factor: 2.293

4.  Characterizing proteins in a native bacterial environment using solid-state NMR spectroscopy.

Authors:  Siddarth Narasimhan; Cecilia Pinto; Alessandra Lucini Paioni; Johan van der Zwan; Gert E Folkers; Marc Baldus
Journal:  Nat Protoc       Date:  2021-01-13       Impact factor: 13.491

Review 5.  Hidden motions and motion-induced invisibility: Dynamics-based spectral editing in solid-state NMR.

Authors:  Irina Matlahov; Patrick C A van der Wel
Journal:  Methods       Date:  2018-04-24       Impact factor: 3.608

6.  Surface-Binding to Cardiolipin Nanodomains Triggers Cytochrome c Pro-apoptotic Peroxidase Activity via Localized Dynamics.

Authors:  Mingyue Li; Abhishek Mandal; Vladimir A Tyurin; Maria DeLucia; Jinwoo Ahn; Valerian E Kagan; Patrick C A van der Wel
Journal:  Structure       Date:  2019-03-14       Impact factor: 5.006

Review 7.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

8.  Fibril polymorphism affects immobilized non-amyloid flanking domains of huntingtin exon1 rather than its polyglutamine core.

Authors:  Hsiang-Kai Lin; Jennifer C Boatz; Inge E Krabbendam; Ravindra Kodali; Zhipeng Hou; Ronald Wetzel; Amalia M Dolga; Michelle A Poirier; Patrick C A van der Wel
Journal:  Nat Commun       Date:  2017-05-24       Impact factor: 14.919

9.  Cataract-associated P23T γD-crystallin retains a native-like fold in amorphous-looking aggregates formed at physiological pH.

Authors:  Jennifer C Boatz; Matthew J Whitley; Mingyue Li; Angela M Gronenborn; Patrick C A van der Wel
Journal:  Nat Commun       Date:  2017-05-05       Impact factor: 14.919

10.  Activation of Cytochrome C Peroxidase Function Through Coordinated Foldon Loop Dynamics upon Interaction with Anionic Lipids.

Authors:  Mingyue Li; Wanyang Sun; Vladimir A Tyurin; Maria DeLucia; Jinwoo Ahn; Valerian E Kagan; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2021-05-24       Impact factor: 6.151

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.