Literature DB >> 21405873

How geometry and internal bias affect the accuracy of eukaryotic gradient sensing.

Bo Hu1, Wen Chen, Wouter-Jan Rappel, Herbert Levine.   

Abstract

Many motile eukaryotic cells determine their direction by measuring external chemical gradients through the binding of ligands to membrane bound receptors. This process is limited by fluctuations arising from the binding process and from the diffusion of the ligand molecules. Here, we apply estimation-theoretic methods to determine the physical limits of gradient sensing for cells that are noncircular and for cells that have an internal bias. Specifically, we derive theoretical expressions for the accuracy of gradient sensing in elliptical cells. This accuracy for highly elliptical cells can significantly deviate from the gradient sensing limits derived for circular cells. Furthermore, we find that a cell cannot improve its sensing of the gradient steepness and direction simultaneously by elongating its cell body. Finally, we derive a lower bound on the accuracy of gradient sensing for cells that possess an internal bias and compare our analytical results with recent experimental findings.

Entities:  

Mesh:

Year:  2011        PMID: 21405873      PMCID: PMC3120218          DOI: 10.1103/PhysRevE.83.021917

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  29 in total

1.  External and internal constraints on eukaryotic chemotaxis.

Authors:  Danny Fuller; Wen Chen; Micha Adler; Alex Groisman; Herbert Levine; Wouter-Jan Rappel; William F Loomis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

2.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

3.  Eukaryotic chemotaxis.

Authors:  Wouter-Jan Rappel; William F Loomis
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Jul-Aug

4.  Receptor noise limitations on chemotactic sensing.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

5.  Receptor noise and directional sensing in eukaryotic chemotaxis.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2008-06-02       Impact factor: 9.161

6.  Cooperativity, sensitivity, and noise in biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Phys Rev Lett       Date:  2008-06-23       Impact factor: 9.161

7.  Accuracy of direct gradient sensing by cell-surface receptors.

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Prog Biophys Mol Biol       Date:  2009-06-11       Impact factor: 3.667

8.  Maximum likelihood and the single receptor.

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Phys Rev Lett       Date:  2009-10-07       Impact factor: 9.161

9.  Phenomenological approach to eukaryotic chemotactic efficiency.

Authors:  Bo Hu; Danny Fuller; William F Loomis; Herbert Levine; Wouter-Jan Rappel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-08

10.  Accuracy of direct gradient sensing by single cells.

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-08       Impact factor: 11.205

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  8 in total

1.  Theoretical model for cell migration with gradient sensing and shape deformation.

Authors:  Tetsuya Hiraiwa; Akinori Baba; Tatsuo Shibata
Journal:  Eur Phys J E Soft Matter       Date:  2013-04-11       Impact factor: 1.890

2.  How input noise limits biochemical sensing in ultrasensitive systems.

Authors:  Bo Hu; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-09-05

3.  Cell-to-cell variation sets a tissue-rheology-dependent bound on collective gradient sensing.

Authors:  Brian A Camley; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-07       Impact factor: 11.205

4.  Quantifying information transmission in eukaryotic gradient sensing and chemotactic response.

Authors:  Bo Hu; Wen Chen; Herbert Levine; Wouter-Jan Rappel
Journal:  J Stat Phys       Date:  2011-04-01       Impact factor: 1.548

5.  Coordinated switching of bacterial flagellar motors: evidence for direct motor-motor coupling?

Authors:  Bo Hu; Yuhai Tu
Journal:  Phys Rev Lett       Date:  2013-04-09       Impact factor: 9.161

6.  How input fluctuations reshape the dynamics of a biological switching system.

Authors:  Bo Hu; David A Kessler; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-12-20

Review 7.  Collective gradient sensing and chemotaxis: modeling and recent developments.

Authors:  Brian A Camley
Journal:  J Phys Condens Matter       Date:  2018-04-12       Impact factor: 2.333

8.  Memory improves precision of cell sensing in fluctuating environments.

Authors:  Gerardo Aquino; Luke Tweedy; Doris Heinrich; Robert G Endres
Journal:  Sci Rep       Date:  2014-07-14       Impact factor: 4.379

  8 in total

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