Literature DB >> 20867888

Physical limits on cellular sensing of spatial gradients.

Bo Hu1, Wen Chen, Wouter-Jan Rappel, Herbert Levine.   

Abstract

Many eukaryotic cells are able to detect chemical gradients by directly measuring spatial concentration differences. The precision of such gradient sensing is limited by fluctuations in the binding of diffusing particles to specific receptors on the cell surface. Here, we explore the physical limits of the spatial sensing mechanism by modeling the chemotactic cell as an Ising spin chain subject to a spatially varying field. Our results demonstrate that the accuracy to sense the gradient direction not only increases dramatically with the cell size but also can be improved significantly by introducing receptor cooperativity. Thus, receptor coupling may open the possibility for small bacteria to perform spatial measurements of gradients, as supported by a recent experimental finding.

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Year:  2010        PMID: 20867888      PMCID: PMC3048844          DOI: 10.1103/PhysRevLett.105.048104

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  26 in total

1.  Receptor sensitivity in bacterial chemotaxis.

Authors:  Victor Sourjik; Howard C Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-11       Impact factor: 11.205

2.  Quantifying noise levels of intercellular signals.

Authors:  Kai Wang; Wouter-Jan Rappel; Rex Kerr; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-06-05

3.  Biased random walk by stochastic fluctuations of chemoattractant-receptor interactions at the lower limit of detection.

Authors:  Peter J M van Haastert; Marten Postma
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

4.  Receptor noise limitations on chemotactic sensing.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

5.  Receptor noise and directional sensing in eukaryotic chemotaxis.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2008-06-02       Impact factor: 9.161

6.  Cooperativity, sensitivity, and noise in biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Phys Rev Lett       Date:  2008-06-23       Impact factor: 9.161

7.  Maximum likelihood and the single receptor.

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Phys Rev Lett       Date:  2009-10-07       Impact factor: 9.161

8.  Phenomenological approach to eukaryotic chemotactic efficiency.

Authors:  Bo Hu; Danny Fuller; William F Loomis; Herbert Levine; Wouter-Jan Rappel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-08

9.  Single-molecule analysis of chemotactic signaling in Dictyostelium cells.

Authors:  M Ueda; Y Sako; T Tanaka; P Devreotes; T Yanagida
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

10.  Accuracy of direct gradient sensing by single cells.

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-08       Impact factor: 11.205

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  35 in total

1.  Noise effects in nonlinear biochemical signaling.

Authors:  Neda Bostani; David A Kessler; Nadav M Shnerb; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-03

2.  Limits to the precision of gradient sensing with spatial communication and temporal integration.

Authors:  Andrew Mugler; Andre Levchenko; Ilya Nemenman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-20       Impact factor: 11.205

3.  Cell-cell communication during collective migration.

Authors:  Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-22       Impact factor: 11.205

4.  Precision of sensing cell length via concentration gradients.

Authors:  Filipe Tostevin
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

5.  Spatiotemporal analysis of different mechanisms for interpreting morphogen gradients.

Authors:  David M Richards; Timothy E Saunders
Journal:  Biophys J       Date:  2015-04-21       Impact factor: 4.033

6.  How receptor diffusion influences gradient sensing.

Authors:  H Nguyen; P Dayan; G J Goodhill
Journal:  J R Soc Interface       Date:  2015-01-06       Impact factor: 4.118

7.  Optimal resource allocation in cellular sensing systems.

Authors:  Christopher C Govern; Pieter Rein Ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-24       Impact factor: 11.205

8.  Energetic costs of cellular computation.

Authors:  Pankaj Mehta; David J Schwab
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-08       Impact factor: 11.205

9.  Theoretical model for cell migration with gradient sensing and shape deformation.

Authors:  Tetsuya Hiraiwa; Akinori Baba; Tatsuo Shibata
Journal:  Eur Phys J E Soft Matter       Date:  2013-04-11       Impact factor: 1.890

10.  The Berg-Purcell limit revisited.

Authors:  Kazunari Kaizu; Wiet de Ronde; Joris Paijmans; Koichi Takahashi; Filipe Tostevin; Pieter Rein ten Wolde
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

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