Literature DB >> 20365769

Phenomenological approach to eukaryotic chemotactic efficiency.

Bo Hu1, Danny Fuller, William F Loomis, Herbert Levine, Wouter-Jan Rappel.   

Abstract

Eukaryotic cells are capable of detecting small chemical gradients for a wide range of background concentrations. Ultimately, fluctuations place a limit on gradient sensing and recent work has focused on the role of stochastic receptor occupancy as one possible limiting factor. Here, we use a phenomenological approach to add spontaneous motility fluctuations to receptor noise and predict the directional statistics of eukaryotic chemotaxis. Specifically, an Itô diffusion equation with direction-dependent multiplicative noise is developed and analytically studied. We show that our approach can naturally accommodate recent experimental data for the chemotaxis of the social amoeba Dictyostelium.

Entities:  

Mesh:

Year:  2010        PMID: 20365769      PMCID: PMC2872938          DOI: 10.1103/PhysRevE.81.031906

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  17 in total

Review 1.  A cell's sense of direction.

Authors:  C A Parent; P N Devreotes
Journal:  Science       Date:  1999-04-30       Impact factor: 47.728

Review 2.  Chemotaxis: signalling the way forward.

Authors:  Peter J M Van Haastert; Peter N Devreotes
Journal:  Nat Rev Mol Cell Biol       Date:  2004-08       Impact factor: 94.444

3.  Physical limits to biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-08       Impact factor: 11.205

4.  Quantifying noise levels of intercellular signals.

Authors:  Kai Wang; Wouter-Jan Rappel; Rex Kerr; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-06-05

5.  Biased random walk by stochastic fluctuations of chemoattractant-receptor interactions at the lower limit of detection.

Authors:  Peter J M van Haastert; Marten Postma
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

6.  Receptor noise limitations on chemotactic sensing.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

7.  The Rician distribution of noisy MRI data.

Authors:  H Gudbjartsson; S Patz
Journal:  Magn Reson Med       Date:  1995-12       Impact factor: 4.668

8.  Accuracy of direct gradient sensing by single cells.

Authors:  Robert G Endres; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-08       Impact factor: 11.205

9.  Functional analysis of spontaneous cell movement under different physiological conditions.

Authors:  Hiroaki Takagi; Masayuki J Sato; Toshio Yanagida; Masahiro Ueda
Journal:  PLoS One       Date:  2008-07-09       Impact factor: 3.240

10.  Persistent cell motion in the absence of external signals: a search strategy for eukaryotic cells.

Authors:  Liang Li; Simon F Nørrelykke; Edward C Cox
Journal:  PLoS One       Date:  2008-05-07       Impact factor: 3.240

View more
  10 in total

1.  Noise effects in nonlinear biochemical signaling.

Authors:  Neda Bostani; David A Kessler; Nadav M Shnerb; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-03

2.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

3.  Theoretical model for cell migration with gradient sensing and shape deformation.

Authors:  Tetsuya Hiraiwa; Akinori Baba; Tatsuo Shibata
Journal:  Eur Phys J E Soft Matter       Date:  2013-04-11       Impact factor: 1.890

Review 4.  Moving towards a paradigm: common mechanisms of chemotactic signaling in Dictyostelium and mammalian leukocytes.

Authors:  Yulia Artemenko; Thomas J Lampert; Peter N Devreotes
Journal:  Cell Mol Life Sci       Date:  2014-05-21       Impact factor: 9.261

5.  Quantifying information transmission in eukaryotic gradient sensing and chemotactic response.

Authors:  Bo Hu; Wen Chen; Herbert Levine; Wouter-Jan Rappel
Journal:  J Stat Phys       Date:  2011-04-01       Impact factor: 1.548

6.  Effects of input noise on a simple biochemical switch.

Authors:  Bo Hu; David A Kessler; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2011-09-28       Impact factor: 9.161

7.  How geometry and internal bias affect the accuracy of eukaryotic gradient sensing.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-02-28

8.  How input fluctuations reshape the dynamics of a biological switching system.

Authors:  Bo Hu; David A Kessler; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-12-20

9.  Modeling and measuring signal relay in noisy directed migration of cell groups.

Authors:  Can Guven; Erin Rericha; Edward Ott; Wolfgang Losert
Journal:  PLoS Comput Biol       Date:  2013-05-02       Impact factor: 4.475

10.  A stochastic description of Dictyostelium chemotaxis.

Authors:  Gabriel Amselem; Matthias Theves; Albert Bae; Eberhard Bodenschatz; Carsten Beta
Journal:  PLoS One       Date:  2012-05-25       Impact factor: 3.240

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.