Literature DB >> 18843108

Accuracy of direct gradient sensing by single cells.

Robert G Endres1, Ned S Wingreen.   

Abstract

Many types of cells are able to accurately sense shallow gradients of chemicals across their diameters, allowing the cells to move toward or away from chemical sources. This chemotactic ability relies on the remarkable capacity of cells to infer gradients from particles randomly arriving at cell-surface receptors by diffusion. Whereas the physical limits of concentration sensing by cells have been explored, there is no theory for the physical limits of gradient sensing. Here, we derive such a theory, using as models a perfectly absorbing sphere and a perfectly monitoring sphere, which, respectively, infer gradients from the absorbed surface particle density or the positions of freely diffusing particles inside a spherical volume. We find that the perfectly absorbing sphere is superior to the perfectly monitoring sphere, both for concentration and gradient sensing, because previously observed particles are never remeasured. The superiority of the absorbing sphere helps explain the presence at the surfaces of cells of signal-degrading enzymes, such as PDE for cAMP in Dictyostelium discoideum (Dicty) and BAR1 for mating factor alpha in Saccharomyces cerevisiae (budding yeast). Quantitatively, our theory compares favorably with recent measurements of Dicty moving up a cAMP gradient, suggesting these cells operate near the physical limits of gradient detection.

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Year:  2008        PMID: 18843108      PMCID: PMC2572938          DOI: 10.1073/pnas.0804688105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  A sensitive, versatile microfluidic assay for bacterial chemotaxis.

Authors:  Hanbin Mao; Paul S Cremer; Michael D Manson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-18       Impact factor: 11.205

2.  An allosteric model for heterogeneous receptor complexes: understanding bacterial chemotaxis responses to multiple stimuli.

Authors:  Bernardo A Mello; Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

3.  Distinguishing modes of eukaryotic gradient sensing.

Authors:  R Skupsky; W Losert; R J Nossal
Journal:  Biophys J       Date:  2005-08-05       Impact factor: 4.033

4.  Fluctuation-induced instabilities in front propagation up a comoving reaction gradient in two dimensions.

Authors:  C Scott Wylie; Herbert Levine; David A Kessler
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-07-26

5.  Chemosensing in Escherichia coli: two regimes of two-state receptors.

Authors:  Juan E Keymer; Robert G Endres; Monica Skoge; Yigal Meir; Ned S Wingreen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-30       Impact factor: 11.205

6.  Biased random walk by stochastic fluctuations of chemoattractant-receptor interactions at the lower limit of detection.

Authors:  Peter J M van Haastert; Marten Postma
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

7.  Protease helps yeast find mating partners.

Authors:  N Barkai; M D Rose; N S Wingreen
Journal:  Nature       Date:  1998-12-03       Impact factor: 49.962

8.  Selection for spiral waves in the social amoebae Dictyostelium.

Authors:  E Pálsson; K J Lee; R E Goldstein; J Franke; R H Kessin; E C Cox
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-09       Impact factor: 11.205

9.  Signal input for a chemotactic response in the cellular slime mold Dictyostelium discoideum.

Authors:  J M Mato; A Losada; V Nanjundiah; T M Konijn
Journal:  Proc Natl Acad Sci U S A       Date:  1975-12       Impact factor: 11.205

10.  Phosphoinositides and Rho proteins spatially regulate actin polymerization to initiate and maintain directed movement in a one-dimensional model of a motile cell.

Authors:  Adriana T Dawes; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2006-11-10       Impact factor: 4.033

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  61 in total

Review 1.  Responding to chemical gradients: bacterial chemotaxis.

Authors:  Victor Sourjik; Ned S Wingreen
Journal:  Curr Opin Cell Biol       Date:  2011-12-09       Impact factor: 8.382

2.  Noise effects in nonlinear biochemical signaling.

Authors:  Neda Bostani; David A Kessler; Nadav M Shnerb; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-03

3.  External and internal constraints on eukaryotic chemotaxis.

Authors:  Danny Fuller; Wen Chen; Micha Adler; Alex Groisman; Herbert Levine; Wouter-Jan Rappel; William F Loomis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

4.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

5.  Limits to the precision of gradient sensing with spatial communication and temporal integration.

Authors:  Andrew Mugler; Andre Levchenko; Ilya Nemenman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-20       Impact factor: 11.205

6.  Cell-cell communication during collective migration.

Authors:  Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-22       Impact factor: 11.205

7.  Physical limits on bacterial navigation in dynamic environments.

Authors:  Andrew M Hein; Douglas R Brumley; Francesco Carrara; Roman Stocker; Simon A Levin
Journal:  J R Soc Interface       Date:  2016-01       Impact factor: 4.118

8.  The local cell curvature guides pseudopodia towards chemoattractants.

Authors:  Peter J M Van Haastert; Leonard Bosgraaf
Journal:  HFSP J       Date:  2009-08-07

9.  Predicted auxiliary navigation mechanism of peritrichously flagellated chemotactic bacteria.

Authors:  Nikita Vladimirov; Dirk Lebiedz; Victor Sourjik
Journal:  PLoS Comput Biol       Date:  2010-03-19       Impact factor: 4.475

Review 10.  Strategies for cellular decision-making.

Authors:  Theodore J Perkins; Peter S Swain
Journal:  Mol Syst Biol       Date:  2009-11-17       Impact factor: 11.429

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