Literature DB >> 23367979

How input fluctuations reshape the dynamics of a biological switching system.

Bo Hu1, David A Kessler, Wouter-Jan Rappel, Herbert Levine.   

Abstract

An important task in quantitative biology is to understand the role of stochasticity in biochemical regulation. Here, as an extension of our recent work [Phys. Rev. Lett. 107, 148101 (2011)], we study how input fluctuations affect the stochastic dynamics of a simple biological switch. In our model, the on transition rate of the switch is directly regulated by a noisy input signal, which is described as a non-negative mean-reverting diffusion process. This continuous process can be a good approximation of the discrete birth-death process and is much more analytically tractable. Within this setup, we apply the Feynman-Kac theorem to investigate the statistical features of the output switching dynamics. Consistent with our previous findings, the input noise is found to effectively suppress the input-dependent transitions. We show analytically that this effect becomes significant when the input signal fluctuates greatly in amplitude and reverts slowly to its mean.

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Year:  2012        PMID: 23367979      PMCID: PMC5836738          DOI: 10.1103/PhysRevE.86.061910

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  43 in total

1.  Noise effects in nonlinear biochemical signaling.

Authors:  Neda Bostani; David A Kessler; Nadav M Shnerb; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-03

2.  Intrinsic and extrinsic contributions to stochasticity in gene expression.

Authors:  Peter S Swain; Michael B Elowitz; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-17       Impact factor: 11.205

3.  How white noise generates power-law switching in bacterial flagellar motors.

Authors:  Yuhai Tu; G Grinstein
Journal:  Phys Rev Lett       Date:  2005-05-25       Impact factor: 9.161

4.  Stochastic protein expression in individual cells at the single molecule level.

Authors:  Long Cai; Nir Friedman; X Sunney Xie
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

5.  Cooperativity, sensitivity, and noise in biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Phys Rev Lett       Date:  2008-06-23       Impact factor: 9.161

6.  The nonequilibrium mechanism for ultrasensitivity in a biological switch: sensing by Maxwell's demons.

Authors:  Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-07       Impact factor: 11.205

7.  Mutual information between input and output trajectories of biochemical networks.

Authors:  Filipe Tostevin; Pieter Rein ten Wolde
Journal:  Phys Rev Lett       Date:  2009-05-27       Impact factor: 9.161

8.  Phenomenological approach to eukaryotic chemotactic efficiency.

Authors:  Bo Hu; Danny Fuller; William F Loomis; Herbert Levine; Wouter-Jan Rappel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-08

9.  How geometry and internal bias affect the accuracy of eukaryotic gradient sensing.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-02-28

Review 10.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

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  3 in total

1.  Noise and information transmission in promoters with multiple internal States.

Authors:  Georg Rieckh; Gašper Tkačik
Journal:  Biophys J       Date:  2014-03-04       Impact factor: 4.033

2.  How input noise limits biochemical sensing in ultrasensitive systems.

Authors:  Bo Hu; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-09-05

3.  Coordinated switching of bacterial flagellar motors: evidence for direct motor-motor coupling?

Authors:  Bo Hu; Yuhai Tu
Journal:  Phys Rev Lett       Date:  2013-04-09       Impact factor: 9.161

  3 in total

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