Literature DB >> 19064934

Receptor noise limitations on chemotactic sensing.

Wouter-Jan Rappel1, Herbert Levine.   

Abstract

Chemotactic eukaryotic cells are able to detect chemoattractant gradients that are both shallow and have a low background concentration. Under these conditions, the noise in the number of bound receptors can be significant and needs to be taken into account in determining the directional sensing process. Here, we quantify numerically the number of bound receptors on the membrane of a disk-shaped cell by using a numerical Monte Carlo tool. The obtained time traces of the receptor occupancy can be used as inputs for any directional sensing model. We investigate the response of the local excitation global inhibition model and a recently developed balanced inactivation model. We determine a measure for the motility of the cell for each model, based on the relevant output variable, as a function of experimental parameters, resulting in several experimentally testable predictions. Furthermore, we show that these two models behave in a qualitatively different fashion when the background concentration is varied. Thus, to properly characterize the sensitivity of cells to receptor occupancy, it is not sufficient to examine the input signal. Rather, one needs to take into account the response of the second messenger pathway.

Mesh:

Year:  2008        PMID: 19064934      PMCID: PMC2614751          DOI: 10.1073/pnas.0804702105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  A diffusion-translocation model for gradient sensing by chemotactic cells.

Authors:  M Postma; P J Van Haastert
Journal:  Biophys J       Date:  2001-09       Impact factor: 4.033

Review 2.  Chemotactic cell movement during development.

Authors:  Dirk Dormann; Cornelis J Weijer
Journal:  Curr Opin Genet Dev       Date:  2003-08       Impact factor: 5.578

Review 3.  Insights into morphogenesis from a simple developmental system.

Authors:  Rex L Chisholm; Richard A Firtel
Journal:  Nat Rev Mol Cell Biol       Date:  2004-07       Impact factor: 94.444

4.  Distinguishing modes of eukaryotic gradient sensing.

Authors:  R Skupsky; W Losert; R J Nossal
Journal:  Biophys J       Date:  2005-08-05       Impact factor: 4.033

5.  Directional sensing in eukaryotic chemotaxis: a balanced inactivation model.

Authors:  Herbert Levine; David A Kessler; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-16       Impact factor: 11.205

6.  Flow photolysis for spatiotemporal stimulation of single cells.

Authors:  Carsten Beta; Danica Wyatt; Wouter-Jan Rappel; Eberhard Bodenschatz
Journal:  Anal Chem       Date:  2007-04-14       Impact factor: 6.986

7.  Biased random walk by stochastic fluctuations of chemoattractant-receptor interactions at the lower limit of detection.

Authors:  Peter J M van Haastert; Marten Postma
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

8.  Membrane-bound Turing patterns.

Authors:  Herbert Levine; Wouter-Jan Rappel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-12-19

9.  Wave-pinning and cell polarity from a bistable reaction-diffusion system.

Authors:  Yoichiro Mori; Alexandra Jilkine; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

Review 10.  The great escape: when cancer cells hijack the genes for chemotaxis and motility.

Authors:  John Condeelis; Robert H Singer; Jeffrey E Segall
Journal:  Annu Rev Cell Dev Biol       Date:  2005       Impact factor: 13.827

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  15 in total

1.  Noise effects in nonlinear biochemical signaling.

Authors:  Neda Bostani; David A Kessler; Nadav M Shnerb; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-01-03

2.  External and internal constraints on eukaryotic chemotaxis.

Authors:  Danny Fuller; Wen Chen; Micha Adler; Alex Groisman; Herbert Levine; Wouter-Jan Rappel; William F Loomis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

3.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

4.  Microfluidic platform for chemotaxis in gradients formed by CXCL12 source-sink cells.

Authors:  Yu-Suke Torisawa; Bobak Mosadegh; Tommaso Bersano-Begey; Jessica M Steele; Kathryn E Luker; Gary D Luker; Shuichi Takayama
Journal:  Integr Biol (Camb)       Date:  2010-09-27       Impact factor: 2.192

5.  High fidelity information processing in folic acid chemotaxis of Dictyostelium amoebae.

Authors:  Igor Segota; Surin Mong; Eitan Neidich; Archana Rachakonda; Catherine J Lussenhop; Carl Franck
Journal:  J R Soc Interface       Date:  2013-09-11       Impact factor: 4.118

6.  Bayesian model predicts the response of axons to molecular gradients.

Authors:  Duncan Mortimer; Julia Feldner; Timothy Vaughan; Irina Vetter; Zac Pujic; William J Rosoff; Kevin Burrage; Peter Dayan; Linda J Richards; Geoffrey J Goodhill
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

7.  Phenomenological approach to eukaryotic chemotactic efficiency.

Authors:  Bo Hu; Danny Fuller; William F Loomis; Herbert Levine; Wouter-Jan Rappel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-03-08

8.  Quantifying information transmission in eukaryotic gradient sensing and chemotactic response.

Authors:  Bo Hu; Wen Chen; Herbert Levine; Wouter-Jan Rappel
Journal:  J Stat Phys       Date:  2011-04-01       Impact factor: 1.548

9.  How input fluctuations reshape the dynamics of a biological switching system.

Authors:  Bo Hu; David A Kessler; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-12-20

10.  Optical control demonstrates switch-like PIP3 dynamics underlying the initiation of immune cell migration.

Authors:  W K Ajith Karunarathne; Lopamudra Giri; Anilkumar K Patel; Kareenhalli V Venkatesh; N Gautam
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-08       Impact factor: 11.205

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