Literature DB >> 18547850

Randomization improves sparse sampling in multidimensional NMR.

Jeffrey C Hoch1, Mark W Maciejewski, Blagoje Filipovic.   

Abstract

While a number of strategies have been developed to reduce data collection requirements for multidimensional NMR based on non-Fourier methods of spectrum analysis, there is an increasing awareness that the principal differences in the performance of these methods is attributable to the sampling strategies employed, and not the method of spectrum analysis per se. The ability of maximum entropy reconstruction to utilize essentially arbitrary sampling schemes makes it a useful platform for comparative analysis of sampling strategies. Here we use maximum entropy reconstruction to demonstrate that artifacts characteristic of sparse sampling result from regularity in the sampling pattern, and that they can be substantially reduced by introducing a degree of randomness to an otherwise regular sampling scheme, without requiring additional sampling.

Mesh:

Year:  2008        PMID: 18547850      PMCID: PMC2574885          DOI: 10.1016/j.jmr.2008.05.011

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  16 in total

1.  Randomized acquisition for the suppression of systematic F1 artifacts in two-dimensional NMR spectroscopy.

Authors:  P J Bowyer; A G Swanson; G A Morris
Journal:  J Magn Reson       Date:  1999-10       Impact factor: 2.229

2.  The multidimensional filter diagonalization method.

Authors:  H Hu; A A De Angelis; V A Mandelshtam; A J Shaka
Journal:  J Magn Reson       Date:  2000-06       Impact factor: 2.229

3.  Modern spectrum analysis in multidimensional NMR spectroscopy: comparison of linear-prediction extrapolation and maximum-entropy reconstruction.

Authors:  Alan S Stern; Kuo-Bin Li; Jeffrey C Hoch
Journal:  J Am Chem Soc       Date:  2002-03-06       Impact factor: 15.419

4.  Novel 2D triple-resonance NMR experiments for sequential resonance assignments of proteins.

Authors:  Keyang Ding; Angela M Gronenborn
Journal:  J Magn Reson       Date:  2002-06       Impact factor: 2.229

5.  GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Am Chem Soc       Date:  2003-02-05       Impact factor: 15.419

6.  Projection-reconstruction of three-dimensional NMR spectra.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Am Chem Soc       Date:  2003-11-19       Impact factor: 15.419

7.  Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data.

Authors:  R A Chylla; J L Markley
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

8.  Application of nonlinear sampling schemes to COSY-type spectra.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Biomol NMR       Date:  1993-09       Impact factor: 2.835

9.  Improved resolution in triple-resonance spectra by nonlinear sampling in the constant-time domain.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Biomol NMR       Date:  1994-07       Impact factor: 2.835

10.  Automatic maximum entropy spectral reconstruction in NMR.

Authors:  Mehdi Mobli; Mark W Maciejewski; Michael R Gryk; Jeffrey C Hoch
Journal:  J Biomol NMR       Date:  2007-08-15       Impact factor: 2.582

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  25 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  Random phase detection in multidimensional NMR.

Authors:  Mark W Maciejewski; Matthew Fenwick; Adam D Schuyler; Alan S Stern; Vitaliy Gorbatyuk; Jeffrey C Hoch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

3.  Performance tuning non-uniform sampling for sensitivity enhancement of signal-limited biological NMR.

Authors:  Melissa R Palmer; Broc R Wenrich; Phillip Stahlfeld; David Rovnyak
Journal:  J Biomol NMR       Date:  2014-03-29       Impact factor: 2.835

4.  Advances in Nuclear Magnetic Resonance for Drug Discovery.

Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

5.  Sensitivity of nonuniform sampling NMR.

Authors:  Melissa R Palmer; Christopher L Suiter; Geneive E Henry; James Rovnyak; Jeffrey C Hoch; Tatyana Polenova; David Rovnyak
Journal:  J Phys Chem B       Date:  2015-05-18       Impact factor: 2.991

6.  Accurate scoring of non-uniform sampling schemes for quantitative NMR.

Authors:  Phillip C Aoto; R Bryn Fenwick; Gerard J A Kroon; Peter E Wright
Journal:  J Magn Reson       Date:  2014-07-02       Impact factor: 2.229

7.  Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern
Journal:  Acc Chem Res       Date:  2014-01-09       Impact factor: 22.384

8.  An Open-Source Sandbox for Increasing the Accessibility of Functional Programming to the Bioinformatics and Scientific Communities.

Authors:  Matthew Fenwick; Colbert Sesanker; Martin R Schiller; Heidi Jc Ellis; M Lee Hinman; Jay Vyas; Michael R Gryk
Journal:  Proc Int Conf Inf Technol New Gener       Date:  2012

9.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

10.  Spectroscopy by integration of frequency and time domain information for fast acquisition of high-resolution dark spectra.

Authors:  Yoh Matsuki; Matthew T Eddy; Judith Herzfeld
Journal:  J Am Chem Soc       Date:  2009-04-08       Impact factor: 15.419

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