Literature DB >> 8075537

Improved resolution in triple-resonance spectra by nonlinear sampling in the constant-time domain.

P Schmieder1, A S Stern, G Wagner, J C Hoch.   

Abstract

Nonlinear sampling along the constant-time dimension is applied to the constant-time HNCO spectrum of the dimerization domain of Gal4. Nonlinear sampling was used for the nitrogen dimension, while the carbon and proton dimensions were sampled linearly. A conventional ct-HNCO spectrum is compared with a nonlinearly sampled spectrum, where the gain in experiment time obtained from nonlinear sampling is used to increase the resolution in the carbonyl dimension. Nonlinearly sampled data are processed by maximum entropy reconstruction. It is shown that the nonlinearly sampled spectrum has a higher resolution, although it was recorded in less time. The constant intensity of the signal in the constant-time dimension allows for a variety of sampling schedules. A schedule of randomly distributed sampling points yields the best results. This general method can be used to significantly increase the quality of heteronuclear constant-time spectra.

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Year:  1994        PMID: 8075537     DOI: 10.1007/bf00156615

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  4 in total

1.  Modern spectrum analysis in nuclear magnetic resonance: alternatives to the Fourier transform.

Authors:  J C Hoch
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

2.  Application of nonlinear sampling schemes to COSY-type spectra.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Biomol NMR       Date:  1993-09       Impact factor: 2.835

Review 3.  Biosynthetic incorporation of 15N and 13C for assignment and interpretation of nuclear magnetic resonance spectra of proteins.

Authors:  L P McIntosh; F W Dahlquist
Journal:  Q Rev Biophys       Date:  1990-02       Impact factor: 5.318

4.  Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

  4 in total
  43 in total

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Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  NMR protein structure determination in living E. coli cells using nonlinear sampling.

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Journal:  Nat Protoc       Date:  2010-05-13       Impact factor: 13.491

3.  Reduced-dimensionality NMR spectroscopy for high-throughput protein resonance assignment.

Authors:  Thomas Szyperski; Deok C Yeh; Dinesh K Sukumaran; Hunter N B Moseley; Gaetano T Montelione
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

4.  GFT NMR experiments for polypeptide backbone and 13Cbeta chemical shift assignment.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

5.  Random phase detection in multidimensional NMR.

Authors:  Mark W Maciejewski; Matthew Fenwick; Adam D Schuyler; Alan S Stern; Vitaliy Gorbatyuk; Jeffrey C Hoch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

6.  Performance tuning non-uniform sampling for sensitivity enhancement of signal-limited biological NMR.

Authors:  Melissa R Palmer; Broc R Wenrich; Phillip Stahlfeld; David Rovnyak
Journal:  J Biomol NMR       Date:  2014-03-29       Impact factor: 2.835

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Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

8.  PR-CALC: a program for the reconstruction of NMR spectra from projections.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2006-03       Impact factor: 2.835

9.  Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR.

Authors:  Franz Hagn; Mahmoud L Nasr; Gerhard Wagner
Journal:  Nat Protoc       Date:  2017-12-07       Impact factor: 13.491

10.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

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