Literature DB >> 24682944

Performance tuning non-uniform sampling for sensitivity enhancement of signal-limited biological NMR.

Melissa R Palmer1, Broc R Wenrich, Phillip Stahlfeld, David Rovnyak.   

Abstract

Non-uniform sampling (NUS) has been established as a route to obtaining true sensitivity enhancements when recording indirect dimensions of decaying signals in the same total experimental time as traditional uniform incrementation of the indirect evolution period. Theory and experiments have shown that NUS can yield up to two-fold improvements in the intrinsic signal-to-noise ratio (SNR) of each dimension, while even conservative protocols can yield 20-40% improvements in the intrinsic SNR of NMR data. Applications of biological NMR that can benefit from these improvements are emerging, and in this work we develop some practical aspects of applying NUS nD-NMR to studies that approach the traditional detection limit of nD-NMR spectroscopy. Conditions for obtaining high NUS sensitivity enhancements are considered here in the context of enabling (1)H,(15)N-HSQC experiments on natural abundance protein samples and (1)H,(13)C-HMBC experiments on a challenging natural product. Through systematic studies we arrive at more precise guidelines to contrast sensitivity enhancements with reduced line shape constraints, and report an alternative sampling density based on a quarter-wave sinusoidal distribution that returns the highest fidelity we have seen to date in line shapes obtained by maximum entropy processing of non-uniformly sampled data.

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Year:  2014        PMID: 24682944      PMCID: PMC4114507          DOI: 10.1007/s10858-014-9823-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  20 in total

1.  Signal enhancement for the sensitivity-limited solid state NMR experiments using a continuous, non-uniform acquisition scheme.

Authors:  Wei Qiang
Journal:  J Magn Reson       Date:  2011-08-30       Impact factor: 2.229

2.  Investigation of the experimental limits of small-sample heteronuclear 2D NMR.

Authors:  Bruce D Hilton; Gary E Martin
Journal:  J Nat Prod       Date:  2010-09-24       Impact factor: 4.050

3.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

4.  Sensitivity enhancement for maximally resolved two-dimensional NMR by nonuniform sampling.

Authors:  David Rovnyak; Mark Sarcone; Ze Jiang
Journal:  Magn Reson Chem       Date:  2011-07-12       Impact factor: 2.447

5.  Quantification of maximum-entropy spectrum reconstructions.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Magn Reson       Date:  1997-04       Impact factor: 2.229

6.  Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra.

Authors:  Sven G Hyberts; Scott A Robson; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

Review 7.  Applications of non-uniform sampling and processing.

Authors:  Sven G Hyberts; Haribabu Arthanari; Gerhard Wagner
Journal:  Top Curr Chem       Date:  2012

Review 8.  Data sampling in multidimensional NMR: fundamentals and strategies.

Authors:  Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern; Jeffrey C Hoch
Journal:  Top Curr Chem       Date:  2012

9.  Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data.

Authors:  Sven G Hyberts; Koh Takeuchi; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2010-02-24       Impact factor: 15.419

10.  Nonuniform sampling and spectral aliasing.

Authors:  Mark W Maciejewski; Harry Z Qui; Iulian Rujan; Mehdi Mobli; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2009-04-16       Impact factor: 2.229

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  13 in total

1.  HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

Authors:  Christoph Wiedemann; Nishit Goradia; Sabine Häfner; Christian Herbst; Matthias Görlach; Oliver Ohlenschläger; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

2.  Sensitivity of nonuniform sampling NMR.

Authors:  Melissa R Palmer; Christopher L Suiter; Geneive E Henry; James Rovnyak; Jeffrey C Hoch; Tatyana Polenova; David Rovnyak
Journal:  J Phys Chem B       Date:  2015-05-18       Impact factor: 2.991

3.  Efficient assignment and NMR analysis of an intact virus using sequential side-chain correlations and DNP sensitization.

Authors:  Ivan V Sergeyev; Boris Itin; Rivkah Rogawski; Loren A Day; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-01       Impact factor: 11.205

4.  Non-Uniform Sampling in NMR Spectroscopy and the Preservation of Spectral Knowledge in the Time and Frequency Domains.

Authors:  Manpreet Kaur; Callie M Lewis; Aaron Chronister; Gabriel S Phun; Leonard J Mueller
Journal:  J Phys Chem A       Date:  2020-06-18       Impact factor: 2.781

5.  Nonuniform sampling in multidimensional NMR for improving spectral sensitivity.

Authors:  Matthew A Zambrello; Adam D Schuyler; Mark W Maciejewski; Frank Delaglio; Irina Bezsonova; Jeffrey C Hoch
Journal:  Methods       Date:  2018-03-06       Impact factor: 3.608

Review 6.  Nonuniform sampling and non-Fourier signal processing methods in multidimensional NMR.

Authors:  Mehdi Mobli; Jeffrey C Hoch
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-10-13       Impact factor: 9.795

7.  Subrandom methods for multidimensional nonuniform sampling.

Authors:  Bradley Worley
Journal:  J Magn Reson       Date:  2016-06-09       Impact factor: 2.229

8.  Convex accelerated maximum entropy reconstruction.

Authors:  Bradley Worley
Journal:  J Magn Reson       Date:  2016-02-10       Impact factor: 2.229

9.  2D J-correlated proton NMR experiments for structural fingerprinting of biotherapeutics.

Authors:  Robert G Brinson; John P Marino
Journal:  J Magn Reson       Date:  2019-08-20       Impact factor: 2.229

10.  Deterministic multidimensional nonuniform gap sampling.

Authors:  Bradley Worley; Robert Powers
Journal:  J Magn Reson       Date:  2015-10-23       Impact factor: 2.229

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