Literature DB >> 19284727

Spectroscopy by integration of frequency and time domain information for fast acquisition of high-resolution dark spectra.

Yoh Matsuki1, Matthew T Eddy, Judith Herzfeld.   

Abstract

A simple and effective method, SIFT (spectroscopy by integration of frequency and time domain information), is introduced for processing nonuniformly sampled multidimensional NMR data. Applying the computationally efficient Gerchberg-Papoulis (G-P) algorithm, used previously in picture processing and medical imaging, SIFT supplements data at nonuniform points in the time domain with the information carried by known "dark" points (i.e., empty regions) in the frequency domain. We demonstrate that this rapid integration not only removes the severe pseudonoise characteristic of the Fourier transforms of nonuniformly sampled data, but also provides a robust procedure for using frequency information to replace time measurements. The latter can be used to avoid unnecessary sampling in sampling-limited experiments, and the former can be used to take advantage of the ability of nonuniformly sampled data to minimize trade-offs between the signal-to-noise ratio and the resolution in sensitivity-limited experiments. Processing 2D and 3D data sets takes about 0.1 and 2 min, respectively, on a personal computer. With these several attractive features, SIFT offers a novel, model-independent, flexible, and user-friendly tool for efficient and accurate processing of multidimensional NMR data.

Entities:  

Mesh:

Year:  2009        PMID: 19284727      PMCID: PMC2711035          DOI: 10.1021/ja807893k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  34 in total

1.  The multidimensional filter diagonalization method.

Authors:  H Hu; A A De Angelis; V A Mandelshtam; A J Shaka
Journal:  J Magn Reson       Date:  2000-06       Impact factor: 2.229

2.  New methods for fast multidimensional NMR.

Authors:  Ray Freeman; Eriks Kupce
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

3.  Fast reconstruction of four-dimensional NMR spectra from plane projections.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

4.  Enhanced covariance spectroscopy from minimal datasets.

Authors:  Yanbin Chen; Fengli Zhang; Wolfgang Bermel; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2006-12-13       Impact factor: 15.419

5.  J-GFT NMR for precise measurement of mutually correlated nuclear spin-spin couplings.

Authors:  Hanudatta S Atreya; Erwin Garcia; Yang Shen; Thomas Szyperski
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

6.  Optimized 3D-NMR sampling for resonance assignment of partially unfolded proteins.

Authors:  Nicolas Pannetier; Klaartje Houben; Laurence Blanchard; Dominique Marion
Journal:  J Magn Reson       Date:  2007-01-23       Impact factor: 2.229

7.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

8.  Quantification of maximum-entropy spectrum reconstructions.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Magn Reson       Date:  1997-04       Impact factor: 2.229

9.  Optimization of resolution and sensitivity of 4D NOESY using multi-dimensional decomposition.

Authors:  T Luan; V Jaravine; A Yee; C H Arrowsmith; V Yu Orekhov
Journal:  J Biomol NMR       Date:  2005-09       Impact factor: 2.835

10.  Crystal polymorphism of protein GB1 examined by solid-state NMR spectroscopy and X-ray diffraction.

Authors:  Heather L Frericks Schmidt; Lindsay J Sperling; Yi Gui Gao; Benjamin J Wylie; John M Boettcher; Scott R Wilson; Chad M Rienstra
Journal:  J Phys Chem B       Date:  2007-12-04       Impact factor: 2.991

View more
  36 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

2.  Solid-state NMR spectroscopy of protein complexes.

Authors:  Shangjin Sun; Yun Han; Sivakumar Paramasivam; Si Yan; Amanda E Siglin; John C Williams; In-Ja L Byeon; Jinwoo Ahn; Angela M Gronenborn; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2012

3.  Signal enhancement for the sensitivity-limited solid state NMR experiments using a continuous, non-uniform acquisition scheme.

Authors:  Wei Qiang
Journal:  J Magn Reson       Date:  2011-08-30       Impact factor: 2.229

4.  Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

Authors:  Jan Stanek; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2010-04-07       Impact factor: 2.835

5.  Non-uniform sampling of NMR relaxation data.

Authors:  Troels E Linnet; Kaare Teilum
Journal:  J Biomol NMR       Date:  2016-02-04       Impact factor: 2.835

6.  Accurate determination of rates from non-uniformly sampled relaxation data.

Authors:  Matthew A Stetz; A Joshua Wand
Journal:  J Biomol NMR       Date:  2016-07-08       Impact factor: 2.835

7.  Accurate scoring of non-uniform sampling schemes for quantitative NMR.

Authors:  Phillip C Aoto; R Bryn Fenwick; Gerard J A Kroon; Peter E Wright
Journal:  J Magn Reson       Date:  2014-07-02       Impact factor: 2.229

8.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Authors:  Shangjin Sun; Si Yan; Changmiao Guo; Mingyue Li; Jeffrey C Hoch; John C Williams; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-11-12       Impact factor: 2.991

Review 9.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

Review 10.  Perspectives in magnetic resonance: NMR in the post-FFT era.

Authors:  Sven G Hyberts; Haribabu Arthanari; Scott A Robson; Gerhard Wagner
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.