Literature DB >> 14611222

Projection-reconstruction of three-dimensional NMR spectra.

Eriks Kupce1, Ray Freeman.   

Abstract

When three-dimensional NMR spectra are presented as two stereoscopic images, they create a convincing three-dimensional impression for the viewer. In an extension of this principle, we record plane projections of a three-dimensional spectrum at different angles, and use this limited information to reconstruct the entire spectrum. Projections onto different skew planes are derived by Fourier transformation of signals acquired while the two evolution parameters are incremented simultaneously at different rates. By limiting the amount of data gathering, this offers an appreciable economy of instrument time. Normally two to six different projections suffice, depending on the complexity of the spectra. There is an order-of-magnitude speed advantage over the conventional methodology, where both evolution dimensions must be explored independently. Results are presented for reconstructed HNCA and HN(CO)CA spectra of ubiquitin and the HNCO spectrum of a 187-residue protein HasA.

Mesh:

Year:  2003        PMID: 14611222     DOI: 10.1021/ja038297z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  52 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  Fast reconstruction of four-dimensional NMR spectra from plane projections.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

3.  Sugar-to-base correlation in nucleic acids with a 5D APSY-HCNCH or two 3D APSY-HCN experiments.

Authors:  Barbara Krähenbühl; Daniela Hofmann; Christophe Maris; Gerhard Wider
Journal:  J Biomol NMR       Date:  2011-12-04       Impact factor: 2.835

4.  4D APSY-HBCB(CG)CDHD experiment for automated assignment of aromatic amino acid side chains in proteins.

Authors:  Barbara Krähenbühl; Sebastian Hiller; Gerhard Wider
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

5.  Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

Authors:  Jan Stanek; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2010-04-07       Impact factor: 2.835

6.  Addressing the overlap problem in the quantitative analysis of two dimensional NMR spectra: application to (15)N relaxation measurements.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Eriks Kupce; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-11       Impact factor: 2.835

7.  Unambiguous assignment of NMR protein backbone signals with a time-shared triple-resonance experiment.

Authors:  Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

8.  Automated projection spectroscopy (APSY).

Authors:  Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

9.  Random sampling of evolution time space and Fourier transform processing.

Authors:  Krzysztof Kazimierczuk; Anna Zawadzka; Wiktor Koźmiński; Igor Zhukov
Journal:  J Biomol NMR       Date:  2006-09-21       Impact factor: 2.835

10.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Authors:  Shangjin Sun; Si Yan; Changmiao Guo; Mingyue Li; Jeffrey C Hoch; John C Williams; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-11-12       Impact factor: 2.991

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