Literature DB >> 8219741

Application of nonlinear sampling schemes to COSY-type spectra.

P Schmieder1, A S Stern, G Wagner, J C Hoch.   

Abstract

Nonlinear sampling along the t1 dimension is applied to COSY-type spectra. The sine dependence of the time domain signals for the cross peaks is matched by a nonlinear sampling scheme that samples most densely around the maximum of the sine function. Data are processed by maximum entropy reconstruction, using a modified implementation of the 'Cambridge' algorithm of Skilling and Bryan. The procedure is demonstrated for P.E. COSY spectra recorded on a cyclic hexapeptide and on a 126-residue domain of the protein villin. The number of t1 values in the nonlinearly sampled experiments was reduced by a factor of four compared to linear sampling. The sensitivity and resolution of the resulting spectra are comparable to those achieved by conventional methods. The method described can thus significantly reduce the measuring time for COSY-type spectra.

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Year:  1993        PMID: 8219741     DOI: 10.1007/bf00174610

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  3 in total

1.  Villin sequence and peptide map identify six homologous domains.

Authors:  W L Bazari; P Matsudaira; M Wallek; T Smeal; R Jakes; Y Ahmed
Journal:  Proc Natl Acad Sci U S A       Date:  1988-07       Impact factor: 11.205

2.  Modern spectrum analysis in nuclear magnetic resonance: alternatives to the Fourier transform.

Authors:  J C Hoch
Journal:  Methods Enzymol       Date:  1989       Impact factor: 1.600

3.  Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins.

Authors:  D Marion; K Wüthrich
Journal:  Biochem Biophys Res Commun       Date:  1983-06-29       Impact factor: 3.575

  3 in total
  33 in total

1.  Non-uniformly sampled double-TROSY hNcaNH experiments for NMR sequential assignments of large proteins.

Authors:  Dominique P Frueh; Zhen-Yu J Sun; David A Vosburg; Christopher T Walsh; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

2.  Optimizing resolution in multidimensional NMR by three-way decomposition.

Authors:  Vladislav Yu Orekhov; Ilghiz Ibraghimov; Martin Billeter
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

3.  Random phase detection in multidimensional NMR.

Authors:  Mark W Maciejewski; Matthew Fenwick; Adam D Schuyler; Alan S Stern; Vitaliy Gorbatyuk; Jeffrey C Hoch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

4.  Unambiguous assignment of NMR protein backbone signals with a time-shared triple-resonance experiment.

Authors:  Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

5.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

6.  A reduced dimensionality NMR pulse sequence and an efficient protocol for unambiguous assignment in intrinsically disordered proteins.

Authors:  Jithender G Reddy; Ramakrishna V Hosur
Journal:  J Biomol NMR       Date:  2014-05-23       Impact factor: 2.835

7.  Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern
Journal:  Acc Chem Res       Date:  2014-01-09       Impact factor: 22.384

8.  Sensitivity gains, linearity, and spectral reproducibility in nonuniformly sampled multidimensional MAS NMR spectra of high dynamic range.

Authors:  Christopher L Suiter; Sivakumar Paramasivam; Guangjin Hou; Shangjin Sun; David Rice; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Biomol NMR       Date:  2014-04-22       Impact factor: 2.835

9.  CONNJUR Workflow Builder: a software integration environment for spectral reconstruction.

Authors:  Matthew Fenwick; Gerard Weatherby; Jay Vyas; Colbert Sesanker; Timothy O Martyn; Heidi J C Ellis; Michael R Gryk
Journal:  J Biomol NMR       Date:  2015-06-12       Impact factor: 2.835

Review 10.  Biomolecular NMR data analysis.

Authors:  Michael R Gryk; Jay Vyas; Mark W Maciejewski
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

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