Literature DB >> 25901905

Sensitivity of nonuniform sampling NMR.

Melissa R Palmer1, Christopher L Suiter2, Geneive E Henry3, James Rovnyak4, Jeffrey C Hoch5, Tatyana Polenova2, David Rovnyak1.   

Abstract

Many information-rich multidimensional experiments in nuclear magnetic resonance spectroscopy can benefit from a signal-to-noise ratio (SNR) enhancement of up to about 2-fold if a decaying signal in an indirect dimension is sampled with nonconsecutive increments, termed nonuniform sampling (NUS). This work provides formal theoretical results and applications to resolve major questions about the scope of the NUS enhancement. First, we introduce the NUS Sensitivity Theorem in which any decreasing sampling density applied to any exponentially decaying signal always results in higher sensitivity (SNR per square root of measurement time) than uniform sampling (US). Several cases will illustrate this theorem and show that even conservative applications of NUS improve sensitivity by useful amounts. Next, we turn to a serious limitation of uniform sampling: the SNR by US decreases for extending evolution times, and thus total experimental times, beyond 1.26T2 (T2 = signal decay constant). Thus, SNR and resolution cannot be simultaneously improved by extending US beyond 1.26T2. We find that NUS can eliminate this constraint, and we introduce the matched NUS SNR Theorem: an exponential sampling density matched to the signal decay always improves the SNR with additional evolution time. Though proved for a specific case, broader classes of NUS densities also improve SNR with evolution time. Applications of these theoretical results are given for a soluble plant natural product and a solid tripeptide (u-(13)C,(15)N-MLF). These formal results clearly demonstrate the inadequacies of applying US to decaying signals in indirect nD-NMR dimensions, supporting a broader adoption of NUS.

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Year:  2015        PMID: 25901905      PMCID: PMC4857715          DOI: 10.1021/jp5126415

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  27 in total

1.  Signal enhancement for the sensitivity-limited solid state NMR experiments using a continuous, non-uniform acquisition scheme.

Authors:  Wei Qiang
Journal:  J Magn Reson       Date:  2011-08-30       Impact factor: 2.229

2.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

Review 3.  Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy.

Authors:  D Rovnyak; J C Hoch; A S Stern; G Wagner
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

4.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

5.  Sensitivity enhancement for maximally resolved two-dimensional NMR by nonuniform sampling.

Authors:  David Rovnyak; Mark Sarcone; Ze Jiang
Journal:  Magn Reson Chem       Date:  2011-07-12       Impact factor: 2.447

6.  Quantification of maximum-entropy spectrum reconstructions.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Magn Reson       Date:  1997-04       Impact factor: 2.229

7.  Sensitivity gains, linearity, and spectral reproducibility in nonuniformly sampled multidimensional MAS NMR spectra of high dynamic range.

Authors:  Christopher L Suiter; Sivakumar Paramasivam; Guangjin Hou; Shangjin Sun; David Rice; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Biomol NMR       Date:  2014-04-22       Impact factor: 2.835

8.  Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra.

Authors:  Sven G Hyberts; Scott A Robson; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

Review 9.  Nonuniform sampling and non-Fourier signal processing methods in multidimensional NMR.

Authors:  Mehdi Mobli; Jeffrey C Hoch
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-10-13       Impact factor: 9.795

10.  Nonuniform sampling and spectral aliasing.

Authors:  Mark W Maciejewski; Harry Z Qui; Iulian Rujan; Mehdi Mobli; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2009-04-16       Impact factor: 2.229

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  31 in total

1.  Non-uniform sampling of NMR relaxation data.

Authors:  Troels E Linnet; Kaare Teilum
Journal:  J Biomol NMR       Date:  2016-02-04       Impact factor: 2.835

2.  Accurate determination of rates from non-uniformly sampled relaxation data.

Authors:  Matthew A Stetz; A Joshua Wand
Journal:  J Biomol NMR       Date:  2016-07-08       Impact factor: 2.835

3.  Importance of time-ordered non-uniform sampling of multi-dimensional NMR spectra of Aβ1-42 peptide under aggregating conditions.

Authors:  Jinfa Ying; C Ashley Barnes; John M Louis; Ad Bax
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

4.  Maturation of the functional mouse CRES amyloid from globular form.

Authors:  Aveline Hewetson; Nazmul H Khan; Matthew J Dominguez; Hoa Quynh Do; R E Kusko; Collin G Borcik; Daniel J Rigden; Ronan M Keegan; R Bryan Sutton; Michael P Latham; Benjamin J Wylie; Gail A Cornwall
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-29       Impact factor: 11.205

5.  Non-Uniform Sampling in NMR Spectroscopy and the Preservation of Spectral Knowledge in the Time and Frequency Domains.

Authors:  Manpreet Kaur; Callie M Lewis; Aaron Chronister; Gabriel S Phun; Leonard J Mueller
Journal:  J Phys Chem A       Date:  2020-06-18       Impact factor: 2.781

6.  Extreme Nonuniform Sampling for Protein NMR Dynamics Studies in Minimal Time.

Authors:  Gregory Jameson; Alexandar L Hansen; Dawei Li; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2019-10-14       Impact factor: 15.419

7.  Characterization by Empirical and Computational Methods of Dictyospiromide, an Intriguing Antioxidant Alkaloid from the Marine Alga Dictyota coriacea.

Authors:  Pengcheng Yan; Ge Li; Chaojie Wang; Jianzhang Wu; Zhongmin Sun; Gary E Martin; Xiao Wang; Mikhail Reibarkh; Josep Saurí; Kirk R Gustafson
Journal:  Org Lett       Date:  2019-09-06       Impact factor: 6.005

8.  Progress in proton-detected solid-state NMR (SSNMR): Super-fast 2D SSNMR collection for nano-mole-scale proteins.

Authors:  Yoshitaka Ishii; Ayesha Wickramasinghe; Isamu Matsuda; Yuki Endo; Yuji Ishii; Yusuke Nishiyama; Takahiro Nemoto; Takayuki Kamihara
Journal:  J Magn Reson       Date:  2017-11-28       Impact factor: 2.229

9.  Gd3+-chelated lipid accelerates solid-state NMR spectroscopy of seven-transmembrane proteins.

Authors:  Chang Liu; Jing Liu; Xiaojun Xu; ShengQi Xiang; Shenlin Wang
Journal:  J Biomol NMR       Date:  2017-05-30       Impact factor: 2.835

10.  Enhanced biosynthetically directed fractional carbon-13 enrichment of proteins for backbone NMR assignments.

Authors:  Broc R Wenrich; Reilly E Sonstrom; Riju A Gupta; David Rovnyak
Journal:  Protein Expr Purif       Date:  2015-08-06       Impact factor: 1.650

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