Literature DB >> 11866612

Modern spectrum analysis in multidimensional NMR spectroscopy: comparison of linear-prediction extrapolation and maximum-entropy reconstruction.

Alan S Stern1, Kuo-Bin Li, Jeffrey C Hoch.   

Abstract

NMR spectroscopy is an inherently insensitive technique, and many challenging applications such as biomolecular studies operate at the very limits of sensitivity and resolution. Advances in superconducting magnet, cryogenic probe, and pulse sequence technologies have resulted in dramatic improvements in both sensitivity and resolution in the past decade. Conversely, the signal-processing method used most widely in NMR spectroscopy, extrapolation of the time domain signal by linear prediction (LP) followed by discrete Fourier transformation (DFT), was developed in the early 1980s and has not been subjected to detailed scrutiny for its impact on sensitivity and resolution. Here we report the first systematic investigation of the accuracy and precision of spectra obtained by LP extrapolation followed by DFT. We compare the results to spectra obtained by maximum-entropy (MaxEnt) reconstruction, which was developed contemporaneously to LP extrapolation but is not widely employed in NMR spectroscopy. Although it reduces truncation artifacts and increases the amplitudes of strong peaks, we find that LP extrapolation generates false-positive peaks and introduces frequency errors. These defects of LP extrapolation become less pronounced for longer data records and higher signal-to-noise ratio. MaxEnt generally yields more detectable peaks for a given number of data samples, more accurate peak frequencies, and fewer false-positive peaks than LP extrapolation. MaxEnt also permits the use of nonlinear sampling, which can give dramatic improvements in resolution. These results show that the use of MaxEnt together with nonlinear sampling, rather than LP extrapolation, could reduce the amount of instrument time required for adequate sensitivity and resolution by a factor of 2 or more.

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Year:  2002        PMID: 11866612     DOI: 10.1021/ja011669o

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  48 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

2.  Optimizing resolution in multidimensional NMR by three-way decomposition.

Authors:  Vladislav Yu Orekhov; Ilghiz Ibraghimov; Martin Billeter
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

Review 3.  Resolution and sensitivity of high field nuclear magnetic resonance spectroscopy.

Authors:  D Rovnyak; J C Hoch; A S Stern; G Wagner
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

4.  Multi-dimensional NMR without coherence transfer: minimizing losses in large systems.

Authors:  Yizhou Liu; James H Prestegard
Journal:  J Magn Reson       Date:  2011-07-21       Impact factor: 2.229

5.  Performance tuning non-uniform sampling for sensitivity enhancement of signal-limited biological NMR.

Authors:  Melissa R Palmer; Broc R Wenrich; Phillip Stahlfeld; David Rovnyak
Journal:  J Biomol NMR       Date:  2014-03-29       Impact factor: 2.835

6.  Fast acquisition of NMR spectra using Fourier transform of non-equispaced data.

Authors:  Dominique Marion
Journal:  J Biomol NMR       Date:  2005-06       Impact factor: 2.835

7.  Comparison of maximum entropy and filtered back-projection methods to reconstruct rapid-scan EPR images.

Authors:  Mark Tseitlin; Amarjot Dhami; Sandra S Eaton; Gareth R Eaton
Journal:  J Magn Reson       Date:  2006-10-27       Impact factor: 2.229

8.  Response to Comments on "Magnetic Resonance Spectroscopy Identifies Neural Progenitor Cells in the Live Human Brain".

Authors:  Petar M Djurić; Helena Benveniste; Mark E Wagshul; Fritz Henn; Grigori Enikolopov; Mirjana Maletić-Savatić
Journal:  Science       Date:  2008-08-01       Impact factor: 47.728

9.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Authors:  Shangjin Sun; Si Yan; Changmiao Guo; Mingyue Li; Jeffrey C Hoch; John C Williams; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-11-12       Impact factor: 2.991

10.  Comment on "magnetic resonance spectroscopy identifies neural progenitor cells in the live human brain".

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Michael R Gryk
Journal:  Science       Date:  2008-08-01       Impact factor: 47.728

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