Literature DB >> 21949370

Random phase detection in multidimensional NMR.

Mark W Maciejewski1, Matthew Fenwick, Adam D Schuyler, Alan S Stern, Vitaliy Gorbatyuk, Jeffrey C Hoch.   

Abstract

Despite advances in resolution accompanying the development of high-field superconducting magnets, biomolecular applications of NMR require multiple dimensions in order to resolve individual resonances, and the achievable resolution is typically limited by practical constraints on measuring time. In addition to the need for measuring long evolution times to obtain high resolution, the need to distinguish the sign of the frequency constrains the ability to shorten measuring times. Sign discrimination is typically accomplished by sampling the signal with two different receiver phases or by selecting a reference frequency outside the range of frequencies spanned by the signal and then sampling at a higher rate. In the parametrically sampled (indirect) time dimensions of multidimensional NMR experiments, either method imposes an additional factor of 2 sampling burden for each dimension. We demonstrate that by using a single detector phase at each time sample point, but randomly altering the phase for different points, the sign ambiguity that attends fixed single-phase detection is resolved. Random phase detection enables a reduction in experiment time by a factor of 2 for each indirect dimension, amounting to a factor of 8 for a four-dimensional experiment, albeit at the cost of introducing sampling artifacts. Alternatively, for fixed measuring time, random phase detection can be used to double resolution in each indirect dimension. Random phase detection is complementary to nonuniform sampling methods, and their combination offers the potential for additional benefits. In addition to applications in biomolecular NMR, random phase detection could be useful in magnetic resonance imaging and other signal processing contexts.

Mesh:

Year:  2011        PMID: 21949370      PMCID: PMC3189084          DOI: 10.1073/pnas.1103723108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  Maximum entropy reconstruction, spectrum analysis and deconvolution in multidimensional nuclear magnetic resonance.

Authors:  J C Hoch; A S Stern
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Novel 2D triple-resonance NMR experiments for sequential resonance assignments of proteins.

Authors:  Keyang Ding; Angela M Gronenborn
Journal:  J Magn Reson       Date:  2002-06       Impact factor: 2.229

3.  New methods for fast multidimensional NMR.

Authors:  Ray Freeman; Eriks Kupce
Journal:  J Biomol NMR       Date:  2003-10       Impact factor: 2.835

4.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

5.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

Review 6.  Generalized Fourier transform for non-uniform sampled data.

Authors:  Krzysztof Kazimierczuk; Maria Misiak; Jan Stanek; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński
Journal:  Top Curr Chem       Date:  2012

7.  Maximum Entropy Spectral Reconstruction of Non-Uniformly Sampled Data.

Authors:  Mehdi Mobli; Jeffrey C Hoch
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2008-11-01       Impact factor: 0.481

8.  Application of nonlinear sampling schemes to COSY-type spectra.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Biomol NMR       Date:  1993-09       Impact factor: 2.835

9.  Fast acquisition of high resolution 4-D amide-amide NOESY with diagonal suppression, sparse sampling and FFT-CLEAN.

Authors:  Jon W Werner-Allen; Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2010-02-21       Impact factor: 2.229

10.  Nonuniform sampling and spectral aliasing.

Authors:  Mark W Maciejewski; Harry Z Qui; Iulian Rujan; Mehdi Mobli; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2009-04-16       Impact factor: 2.229

View more
  10 in total

1.  An Open-Source Sandbox for Increasing the Accessibility of Functional Programming to the Bioinformatics and Scientific Communities.

Authors:  Matthew Fenwick; Colbert Sesanker; Martin R Schiller; Heidi Jc Ellis; M Lee Hinman; Jay Vyas; Michael R Gryk
Journal:  Proc Int Conf Inf Technol New Gener       Date:  2012

2.  Formalism for hypercomplex multidimensional NMR employing partial-component subsampling.

Authors:  Adam D Schuyler; Mark W Maciejewski; Alan S Stern; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2012-11-29       Impact factor: 2.229

3.  Nonuniform sampling of hypercomplex multidimensional NMR experiments: Dimensionality, quadrature phase and randomization.

Authors:  Adam D Schuyler; Mark W Maciejewski; Alan S Stern; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2015-03-10       Impact factor: 2.229

4.  Development and application of aromatic [(13)C, (1)H] SOFAST-HMQC NMR experiment for nucleic acids.

Authors:  Bharathwaj Sathyamoorthy; Janghyun Lee; Isaac Kimsey; Laura R Ganser; Hashim Al-Hashimi
Journal:  J Biomol NMR       Date:  2014-09-04       Impact factor: 2.835

Review 5.  Nonuniform sampling and non-Fourier signal processing methods in multidimensional NMR.

Authors:  Mehdi Mobli; Jeffrey C Hoch
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-10-13       Impact factor: 9.795

Review 6.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

7.  Beyond Fourier.

Authors:  Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2017-03-27       Impact factor: 2.229

8.  Sparse sampling methods in multidimensional NMR.

Authors:  Mehdi Mobli; Mark W Maciejewski; Adam D Schuyler; Alan S Stern; Jeffrey C Hoch
Journal:  Phys Chem Chem Phys       Date:  2012-04-05       Impact factor: 3.676

9.  Radiation damping in modern NMR experiments: progress and challenges.

Authors:  V V Krishnan; Nagarajan Murali
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2012-06-15       Impact factor: 9.795

10.  Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction.

Authors:  M J Bostock; D J Holland; D Nietlispach
Journal:  J Biomol NMR       Date:  2016-09-20       Impact factor: 2.835

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.