Literature DB >> 12553842

GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information.

Seho Kim1, Thomas Szyperski.   

Abstract

Widely used higher-dimensional Fourier transform (FT) NMR spectroscopy suffers from two major drawbacks: (i) The minimal measurement time of an N-dimensional FT NMR experiment, which is constrained by the need to sample N - 1 indirect dimensions, may exceed by far the measurement time required to achieve sufficient signal-to-noise ratios. (ii) The low resolution in the indirect dimensions severely limits the precision of the indirect chemical shift measurements. To relax on constraints arising from these drawbacks, we present here an acquisition scheme which is based on the phase-sensitive joint sampling of the indirect dimensions spanning a subspace of a conventional NMR experiment. This allows one to very rapidly obtain high-dimensional NMR spectral information. Because the phase-sensitive joint sampling yields subspectra containing "chemical shift multiplets", alternative data processing is required for editing the components of the multiplets. The subspectra are linearly combined using a so-called "G-matrix" and subsequently Fourier-transformed. The chemical shifts are multiply encoded in the resonance lines constituting the shift multiplets. This corresponds to performing statistically independent multiple measurements, and the chemical shifts can thus be obtained with high precision. To indicate that a combined G-matrix and FT is employed, we named the new approach "GFT NMR spectroscopy". GFT NMR opens new avenues to establish high-throughput protein structure determination, to investigate systems with a higher degree of chemical shift degeneracy, and to study dynamic phenomena such as slow folding of biological macromolecules in greater detail.

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Year:  2003        PMID: 12553842     DOI: 10.1021/ja028197d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  132 in total

1.  Enhanced sensitivity by nonuniform sampling enables multidimensional MAS NMR spectroscopy of protein assemblies.

Authors:  Sivakumar Paramasivam; Christopher L Suiter; Guangjin Hou; Shangjin Sun; Melissa Palmer; Jeffrey C Hoch; David Rovnyak; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-06-18       Impact factor: 2.991

Review 2.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

3.  Reconstruction of the three-dimensional NMR spectrum of a protein from a set of plane projections.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Biomol NMR       Date:  2003-12       Impact factor: 2.835

4.  Multiple quadrature detection in reduced dimensionality experiments.

Authors:  Wiktor Koźmiński; Igor Zhukov
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

5.  GFT NMR experiments for polypeptide backbone and 13Cbeta chemical shift assignment.

Authors:  Seho Kim; Thomas Szyperski
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

6.  G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment.

Authors:  Hanudatta S Atreya; Thomas Szyperski
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

7.  (3,2)D GFT-NMR experiments for fast data collection from proteins.

Authors:  Youlin Xia; Guang Zhu; Sudha Veeraraghavan; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

8.  The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold.

Authors:  Catherine Herve du Penhoat; Hanudatta S Atreya; Yang Shen; Gaohua Liu; Thomas B Acton; Rong Xiao; Zhaohui Li; Diana Murray; Gaetano T Montelione; Thomas Szyperski
Journal:  Protein Sci       Date:  2004-05       Impact factor: 6.725

9.  Combined frequency- and time-domain NMR spectroscopy. Application to fast protein resonance assignment.

Authors:  Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2004-05       Impact factor: 2.835

10.  A time-saving strategy for MAS NMR spectroscopy by combining nonuniform sampling and paramagnetic relaxation assisted condensed data collection.

Authors:  Shangjin Sun; Si Yan; Changmiao Guo; Mingyue Li; Jeffrey C Hoch; John C Williams; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2012-11-12       Impact factor: 2.991

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