Literature DB >> 17416630

Stochastic signal processing and transduction in chemotactic response of eukaryotic cells.

Masahiro Ueda1, Tatsuo Shibata.   

Abstract

Single-molecule imaging analysis of chemotactic response in eukaryotic cells has revealed a stochastic nature in the input signals and the signal transduction processes. This leads to a fundamental question about the signaling processes: how does the signaling system operate under stochastic fluctuations or noise? Here, we report a stochastic model of chemotactic signaling in which noise and signal propagation along the transmembrane signaling pathway by chemoattractant receptors can be analyzed quantitatively. The results obtained from this analysis reveal that the second-messenger-production reactions by the receptors generate noisy signals that contain intrinsic noise inherently generated at this reaction and extrinsic noise propagated from the ligand-receptor binding. Such intrinsic and extrinsic noise limits the directional sensing ability of chemotactic cells, which may explain the dependence of chemotactic accuracy on chemical gradients that has been observed experimentally. Our analysis also reveals regulatory mechanisms for signal improvement in the stochastically operating signaling system by analyzing how the SNR of chemotactic signals can be improved on or deteriorated by the stochastic properties of receptors and second-messenger molecules. Theoretical consideration of noisy signal transduction by chemotactic signaling systems can further be applied to signaling systems in general.

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Year:  2007        PMID: 17416630      PMCID: PMC1914446          DOI: 10.1529/biophysj.106.100263

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Receptor-mediated activation of heterotrimeric G-proteins in living cells.

Authors:  C Janetopoulos; T Jin; P Devreotes
Journal:  Science       Date:  2001-03-23       Impact factor: 47.728

2.  Stochastic gene expression in a single cell.

Authors:  Michael B Elowitz; Arnold J Levine; Eric D Siggia; Peter S Swain
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

3.  Summing up the noise in gene networks.

Authors:  Johan Paulsson
Journal:  Nature       Date:  2004-01-29       Impact factor: 49.962

Review 4.  Single-molecule visualization in cell biology.

Authors:  Yasushi Sako; Toshio Yanagida
Journal:  Nat Rev Mol Cell Biol       Date:  2003-09       Impact factor: 94.444

Review 5.  Rotation of F1-ATPase: how an ATP-driven molecular machine may work.

Authors:  Kazuhiko Kinosita; Kengo Adachi; Hiroyasu Itoh
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

6.  A new chemotaxis assay shows the extreme sensitivity of axons to molecular gradients.

Authors:  William J Rosoff; Jeffrey S Urbach; Mark A Esrick; Ryan G McAllister; Linda J Richards; Geoffrey J Goodhill
Journal:  Nat Neurosci       Date:  2004-05-25       Impact factor: 24.884

7.  Local excitation, global inhibition mechanism for gradient sensing: an interactive applet.

Authors:  Brett Kutscher; Peter Devreotes; Pablo A Iglesias
Journal:  Sci STKE       Date:  2004-02-03

8.  Single-molecule analysis of chemotactic signaling in Dictyostelium cells.

Authors:  M Ueda; Y Sako; T Tanaka; P Devreotes; T Yanagida
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

Review 9.  Making all the right moves: chemotaxis in neutrophils and Dictyostelium.

Authors:  Carole A Parent
Journal:  Curr Opin Cell Biol       Date:  2004-02       Impact factor: 8.382

10.  Sensitization of Dictyostelium chemotaxis by phosphoinositide-3-kinase-mediated self-organizing signalling patches.

Authors:  Marten Postma; Jeroen Roelofs; Joachim Goedhart; Harriët M Loovers; Antonie J W G Visser; Peter J M Van Haastert
Journal:  J Cell Sci       Date:  2004-05-25       Impact factor: 5.285

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  42 in total

1.  Bimodal analysis reveals a general scaling law governing nondirected and chemotactic cell motility.

Authors:  J Scott Gruver; Alka A Potdar; Junhwan Jeon; Jiqing Sai; Bridget Anderson; Donna Webb; Ann Richmond; Vito Quaranta; Peter T Cummings; Chang Y Chung
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

2.  Physical limits on cellular sensing of spatial gradients.

Authors:  Bo Hu; Wen Chen; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-07-23       Impact factor: 9.161

3.  Limits to the precision of gradient sensing with spatial communication and temporal integration.

Authors:  Andrew Mugler; Andre Levchenko; Ilya Nemenman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-20       Impact factor: 11.205

4.  Receptor noise limitations on chemotactic sensing.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

5.  Receptor noise and directional sensing in eukaryotic chemotaxis.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2008-06-02       Impact factor: 9.161

6.  The cost of sensitive response and accurate adaptation in networks with an incoherent type-1 feed-forward loop.

Authors:  Ganhui Lan; Yuhai Tu
Journal:  J R Soc Interface       Date:  2013-07-24       Impact factor: 4.118

7.  High fidelity information processing in folic acid chemotaxis of Dictyostelium amoebae.

Authors:  Igor Segota; Surin Mong; Eitan Neidich; Archana Rachakonda; Catherine J Lussenhop; Carl Franck
Journal:  J R Soc Interface       Date:  2013-09-11       Impact factor: 4.118

8.  Intracellular encoding of spatiotemporal guidance cues in a self-organizing signaling system for chemotaxis in Dictyostelium cells.

Authors:  Tatsuo Shibata; Masatoshi Nishikawa; Satomi Matsuoka; Masahiro Ueda
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

9.  The local cell curvature guides pseudopodia towards chemoattractants.

Authors:  Peter J M Van Haastert; Leonard Bosgraaf
Journal:  HFSP J       Date:  2009-08-07

10.  Bayesian model predicts the response of axons to molecular gradients.

Authors:  Duncan Mortimer; Julia Feldner; Timothy Vaughan; Irina Vetter; Zac Pujic; William J Rosoff; Kevin Burrage; Peter Dayan; Linda J Richards; Geoffrey J Goodhill
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

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