Literature DB >> 19541606

Bayesian model predicts the response of axons to molecular gradients.

Duncan Mortimer1, Julia Feldner, Timothy Vaughan, Irina Vetter, Zac Pujic, William J Rosoff, Kevin Burrage, Peter Dayan, Linda J Richards, Geoffrey J Goodhill.   

Abstract

Axon guidance by molecular gradients plays a crucial role in wiring up the nervous system. However, the mechanisms axons use to detect gradients are largely unknown. We first develop a Bayesian "ideal observer" analysis of gradient detection by axons, based on the hypothesis that a principal constraint on gradient detection is intrinsic receptor binding noise. Second, from this model, we derive an equation predicting how the degree of response of an axon to a gradient should vary with gradient steepness and absolute concentration. Third, we confirm this prediction quantitatively by performing the first systematic experimental analysis of how axonal response varies with both these quantities. These experiments demonstrate a degree of sensitivity much higher than previously reported for any chemotacting system. Together, these results reveal both the quantitative constraints that must be satisfied for effective axonal guidance and the computational principles that may be used by the underlying signal transduction pathways, and allow predictions for the degree of response of axons to gradients in a wide variety of in vivo and in vitro settings.

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Year:  2009        PMID: 19541606      PMCID: PMC2700145          DOI: 10.1073/pnas.0900715106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  42 in total

1.  Calcium signalling in the guidance of nerve growth by netrin-1.

Authors:  K Hong; M Nishiyama; J Henley; M Tessier-Lavigne; M Poo
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

2.  Turning of nerve growth cones induced by localized increases in intracellular calcium ions.

Authors:  J Q Zheng
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

3.  Localization of the G protein betagamma complex in living cells during chemotaxis.

Authors:  T Jin; N Zhang; Y Long; C A Parent; P N Devreotes
Journal:  Science       Date:  2000-02-11       Impact factor: 47.728

Review 4.  Mechanisms of axon guidance in the developing nervous system.

Authors:  Céline Plachez; Linda J Richards
Journal:  Curr Top Dev Biol       Date:  2005       Impact factor: 4.897

5.  Adaptation is not required to explain the long-term response of axons to molecular gradients.

Authors:  Jun Xu; William J Rosoff; Jeffrey S Urbach; Geoffrey J Goodhill
Journal:  Development       Date:  2005-09-21       Impact factor: 6.868

6.  Physical limits to biochemical signaling.

Authors:  William Bialek; Sima Setayeshgar
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-08       Impact factor: 11.205

7.  Generating controlled molecular gradients in 3D gels.

Authors:  W J Rosoff; R McAllister; M A Esrick; G J Goodhill; J S Urbach
Journal:  Biotechnol Bioeng       Date:  2005-09-20       Impact factor: 4.530

8.  Distinguishing modes of eukaryotic gradient sensing.

Authors:  R Skupsky; W Losert; R J Nossal
Journal:  Biophys J       Date:  2005-08-05       Impact factor: 4.033

9.  Structural and mechanistic insights into nerve growth factor interactions with the TrkA and p75 receptors.

Authors:  Tom Wehrman; Xiaolin He; Bill Raab; Abhiram Dukipatti; Helen Blau; K Christopher Garcia
Journal:  Neuron       Date:  2007-01-04       Impact factor: 17.173

10.  Noisy information processing through transcriptional regulation.

Authors:  Eric Libby; Theodore J Perkins; Peter S Swain
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-09       Impact factor: 11.205

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  42 in total

Review 1.  The limits of brain determinacy.

Authors:  Peter G H Clarke
Journal:  Proc Biol Sci       Date:  2012-02-01       Impact factor: 5.349

2.  Membrane tension, myosin force, and actin turnover maintain actin treadmill in the nerve growth cone.

Authors:  Erin M Craig; David Van Goor; Paul Forscher; Alex Mogilner
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

3.  External and internal constraints on eukaryotic chemotaxis.

Authors:  Danny Fuller; Wen Chen; Micha Adler; Alex Groisman; Herbert Levine; Wouter-Jan Rappel; William F Loomis
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

4.  Designing in vivo concentration gradients with discrete controlled release: a computational model.

Authors:  Edgar Y Walker; Dennis L Barbour
Journal:  J Neural Eng       Date:  2010-07-19       Impact factor: 5.379

5.  Axon guidance by growth-rate modulation.

Authors:  Duncan Mortimer; Zac Pujic; Timothy Vaughan; Andrew W Thompson; Julia Feldner; Irina Vetter; Geoffrey J Goodhill
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

Review 6.  Using theoretical models to analyse neural development.

Authors:  Arjen van Ooyen
Journal:  Nat Rev Neurosci       Date:  2011-05-18       Impact factor: 34.870

7.  c-Jun gene-modified Schwann cells: upregulating multiple neurotrophic factors and promoting neurite outgrowth.

Authors:  Liangliang Huang; Xin Quan; Zhongyang Liu; Teng Ma; Yazhen Wu; Jun Ge; Shu Zhu; Yafeng Yang; Liang Liu; Zhen Sun; Jinghui Huang; Zhuojing Luo
Journal:  Tissue Eng Part A       Date:  2015-04       Impact factor: 3.845

8.  Mechanistic insights from a quantitative analysis of pollen tube guidance.

Authors:  Shannon F Stewman; Matthew Jones-Rhoades; Prabhakar Bhimalapuram; Martin Tchernookov; Daphne Preuss; Aaron R Dinner
Journal:  BMC Plant Biol       Date:  2010-02-22       Impact factor: 4.215

9.  Neocortical axon arbors trade-off material and conduction delay conservation.

Authors:  Julian M L Budd; Krisztina Kovács; Alex S Ferecskó; Péter Buzás; Ulf T Eysel; Zoltán F Kisvárday
Journal:  PLoS Comput Biol       Date:  2010-03-12       Impact factor: 4.475

10.  A mechanism for the polarity formation of chemoreceptors at the growth cone membrane for gradient amplification during directional sensing.

Authors:  Cedric Bouzigues; David Holcman; Maxime Dahan
Journal:  PLoS One       Date:  2010-02-22       Impact factor: 3.240

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