Literature DB >> 14749823

Summing up the noise in gene networks.

Johan Paulsson1.   

Abstract

Random fluctuations in genetic networks are inevitable as chemical reactions are probabilistic and many genes, RNAs and proteins are present in low numbers per cell. Such 'noise' affects all life processes and has recently been measured using green fluorescent protein (GFP). Two studies show that negative feedback suppresses noise, and three others identify the sources of noise in gene expression. Here I critically analyse these studies and present a simple equation that unifies and extends both the mathematical and biological perspectives.

Mesh:

Year:  2004        PMID: 14749823     DOI: 10.1038/nature02257

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  394 in total

1.  Control of stochasticity in eukaryotic gene expression.

Authors:  Jonathan M Raser; Erin K O'Shea
Journal:  Science       Date:  2004-05-27       Impact factor: 47.728

2.  Discreteness-induced concentration inversion in mesoscopic chemical systems.

Authors:  Rajesh Ramaswamy; Nélido González-Segredo; Ivo F Sbalzarini; Ramon Grima
Journal:  Nat Commun       Date:  2012-04-10       Impact factor: 14.919

3.  Analytical distribution and tunability of noise in a model of promoter progress.

Authors:  Jiajun Zhang; Luonan Chen; Tianshou Zhou
Journal:  Biophys J       Date:  2012-03-20       Impact factor: 4.033

4.  Landscape, flux, correlation, resonance, coherence, stability, and key network wirings of stochastic circadian oscillation.

Authors:  Chunhe Li; Erkang Wang; Jin Wang
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

5.  The mean and noise of protein numbers in stochastic gene expression.

Authors:  Juhong Kuang; Moxun Tang; Jianshe Yu
Journal:  J Math Biol       Date:  2012-05-26       Impact factor: 2.259

6.  Abduction and asylum in the lives of transcription factors.

Authors:  Anat Burger; Aleksandra M Walczak; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-16       Impact factor: 11.205

7.  Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression.

Authors:  Michał Komorowski; Bärbel Finkenstädt; David Rand
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

8.  Interplay between intrinsic noise and the stochasticity of the cell cycle in bacterial colonies.

Authors:  Oriol Canela-Xandri; Francesc Sagués; Javier Buceta
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

9.  Stochastic variation: from single cells to superorganisms.

Authors:  Maria L Kilfoil; Paul Lasko; Ehab Abouheif
Journal:  HFSP J       Date:  2009-10-09

10.  Design of regulation and dynamics in simple biochemical pathways.

Authors:  Ram Rup Sarkar; R Maithreye; Somdatta Sinha
Journal:  J Math Biol       Date:  2010-10-19       Impact factor: 2.259

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