Literature DB >> 16186349

Using unsupervised learning with independent component analysis to identify patterns of glaucomatous visual field defects.

Michael H Goldbaum1, Pamela A Sample, Zuohua Zhang, Kwokleung Chan, Jiucang Hao, Te-Won Lee, Catherine Boden, Christopher Bowd, Rupert Bourne, Linda Zangwill, Terrence Sejnowski, David Spinak, Robert N Weinreb.   

Abstract

PURPOSE: Clustering by unsupervised learning with machine learning classifiers was shown to segment clusters of patterns in standard automated perimetry (SAP) for glaucoma in previous publications. In this study, unsupervised learning by independent component analysis decomposed SAP field patterns into axes, and the information represented by these axes was evaluated.
METHODS: SAP fields were used that were obtained with the Humphrey Visual Field Analyzer (Carl Zeiss Meditec, Dublin, CA) from 189 normal eyes and 156 eyes with glaucomatous optic neuropathy (GON) determined by masked review with stereoscopic optic disc photographs. The variational Bayesian independent component analysis mixture model (vB-ICA-mm) partitioned the SAP fields into the most informative number of clusters. Simultaneously, the model learned an optimal number of maximally independent axes for each cluster.
RESULTS: The most informative number of clusters in the SAP set was two. vB-ICA-mm placed 68.6% of the eyes with GON in a cluster labeled G and 98.4% of the eyes with normal optic discs in a cluster labeled N. Cluster G optimally contained six axes. Post hoc analysis of patterns generated at -1 SD and +2 SD from the cluster G mean on the six axes revealed defects similar to those identified by experts as indicative of glaucoma. SAP fields associated with an axis showed increasing severity, as they were located farther in the positive direction from the cluster G mean.
CONCLUSIONS: vB-ICA-mm represented the SAP fields with patterns that were meaningful for glaucoma experts. This process also captured severity in the patterns uncovered. These findings should validate vB-ICA-mm as a data-mining technique for new and unfamiliar complex tests.

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Year:  2005        PMID: 16186349      PMCID: PMC1866286          DOI: 10.1167/iovs.04-1167

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  10 in total

1.  Comparing neural networks and linear discriminant functions for glaucoma detection using confocal scanning laser ophthalmoscopy of the optic disc.

Authors:  Christopher Bowd; Kwokleung Chan; Linda M Zangwill; Michael H Goldbaum; Te-Won Lee; Terrence J Sejnowski; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-11       Impact factor: 4.799

2.  Using machine learning classifiers to identify glaucomatous change earlier in standard visual fields.

Authors:  Pamela A Sample; Michael H Goldbaum; Kwokleung Chan; Catherine Boden; Te-Won Lee; Christiana Vasile; Andreas G Boehm; Terrence Sejnowski; Chris A Johnson; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-08       Impact factor: 4.799

3.  Spatial classification of glaucomatous visual field loss.

Authors:  D B Henson; S E Spenceley; D R Bull
Journal:  Br J Ophthalmol       Date:  1996-06       Impact factor: 4.638

4.  Comparing machine learning classifiers for diagnosing glaucoma from standard automated perimetry.

Authors:  Michael H Goldbaum; Pamela A Sample; Kwokleung Chan; Julia Williams; Te-Won Lee; Eytan Blumenthal; Christopher A Girkin; Linda M Zangwill; Christopher Bowd; Terrence Sejnowski; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-01       Impact factor: 4.799

5.  Variational Learning of Clusters of Undercomplete Nonsymmetric Independent Components.

Authors:  Kwokleung Chan; Te-Won Lee; Terrence J Sejnowski
Journal:  J Mach Learn Res       Date:  2002-08-01       Impact factor: 3.654

6.  Interpretation of automated perimetry for glaucoma by neural network.

Authors:  M H Goldbaum; P A Sample; H White; B Côlt; P Raphaelian; R D Fechtner; R N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  1994-08       Impact factor: 4.799

7.  Assessing the utility of reliability indices for automated visual fields. Testing ocular hypertensives.

Authors:  M Bickler-Bluth; G L Trick; A E Kolker; D G Cooper
Journal:  Ophthalmology       Date:  1989-05       Impact factor: 12.079

8.  Neural networks to identify glaucoma with structural and functional measurements.

Authors:  L Brigatti; D Hoffman; J Caprioli
Journal:  Am J Ophthalmol       Date:  1996-05       Impact factor: 5.258

9.  Unsupervised machine learning with independent component analysis to identify areas of progression in glaucomatous visual fields.

Authors:  Pamela A Sample; Catherine Boden; Zuohua Zhang; John Pascual; Te-Won Lee; Linda M Zangwill; Robert N Weinreb; Jonathan G Crowston; Esther M Hoffmann; Felipe A Medeiros; Terrence Sejnowski; Michael Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-10       Impact factor: 4.799

10.  Using unsupervised learning with variational bayesian mixture of factor analysis to identify patterns of glaucomatous visual field defects.

Authors:  Pamela A Sample; Kwokleung Chan; Catherine Boden; Te-Won Lee; Eytan Z Blumenthal; Robert N Weinreb; Antje Bernd; John Pascual; Jiucang Hao; Terrence Sejnowski; Michael H Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-08       Impact factor: 4.799

  10 in total
  17 in total

1.  Spatial pattern of glaucomatous visual field loss obtained with regionally condensed stimulus arrangements.

Authors:  Ulrich Schiefer; Eleni Papageorgiou; Pamela A Sample; John P Pascual; Bettina Selig; Elke Krapp; Jens Paetzold
Journal:  Invest Ophthalmol Vis Sci       Date:  2010-06-10       Impact factor: 4.799

2.  Learning from data: recognizing glaucomatous defect patterns and detecting progression from visual field measurements.

Authors:  Siamak Yousefi; Michael H Goldbaum; Madhusudhanan Balasubramanian; Felipe A Medeiros; Linda M Zangwill; Jeffrey M Liebmann; Christopher A Girkin; Robert N Weinreb; Christopher Bowd
Journal:  IEEE Trans Biomed Eng       Date:  2014-04-01       Impact factor: 4.538

3.  Recognizing patterns of visual field loss using unsupervised machine learning.

Authors:  Siamak Yousefi; Michael H Goldbaum; Linda M Zangwill; Felipe A Medeiros; Christopher Bowd
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2014-03-21

4.  Progression of patterns (POP): a machine classifier algorithm to identify glaucoma progression in visual fields.

Authors:  Michael H Goldbaum; Intae Lee; Giljin Jang; Madhusudhanan Balasubramanian; Pamela A Sample; Robert N Weinreb; Jeffrey M Liebmann; Christopher A Girkin; Douglas R Anderson; Linda M Zangwill; Marie-Josee Fredette; Tzyy-Ping Jung; Felipe A Medeiros; Christopher Bowd
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-09-25       Impact factor: 4.799

5.  Patterns of functional vision loss in glaucoma determined with archetypal analysis.

Authors:  Tobias Elze; Louis R Pasquale; Lucy Q Shen; Teresa C Chen; Janey L Wiggs; Peter J Bex
Journal:  J R Soc Interface       Date:  2015-02-06       Impact factor: 4.118

6.  Patterns of glaucomatous visual field loss in sita fields automatically identified using independent component analysis.

Authors:  Michael H Goldbaum; Gil-Jin Jang; Chris Bowd; Jiucang Hao; Linda M Zangwill; Jeffrey Liebmann; Christopher Girkin; Tzyy-Ping Jung; Robert N Weinreb; Pamela A Sample
Journal:  Trans Am Ophthalmol Soc       Date:  2009-12

7.  Artificial Intelligence Classification of Central Visual Field Patterns in Glaucoma.

Authors:  Mengyu Wang; Lucy Q Shen; Louis R Pasquale; Michael V Boland; Sarah R Wellik; Carlos Gustavo De Moraes; Jonathan S Myers; Thao D Nguyen; Robert Ritch; Pradeep Ramulu; Hui Wang; Jorryt Tichelaar; Dian Li; Peter J Bex; Tobias Elze
Journal:  Ophthalmology       Date:  2019-12-12       Impact factor: 12.079

8.  Combining functional and structural tests improves the diagnostic accuracy of relevance vector machine classifiers.

Authors:  Lyne Racette; Christine Y Chiou; Jiucang Hao; Christopher Bowd; Michael H Goldbaum; Linda M Zangwill; Te-Won Lee; Robert N Weinreb; Pamela A Sample
Journal:  J Glaucoma       Date:  2010-03       Impact factor: 2.503

9.  Assessing visual field clustering schemes using machine learning classifiers in standard perimetry.

Authors:  Catherine Boden; Kwokleung Chan; Pamela A Sample; Jiucang Hao; Te-Wan Lee; Linda M Zangwill; Robert N Weinreb; Michael H Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-12       Impact factor: 4.799

10.  Unsupervised machine learning with independent component analysis to identify areas of progression in glaucomatous visual fields.

Authors:  Pamela A Sample; Catherine Boden; Zuohua Zhang; John Pascual; Te-Won Lee; Linda M Zangwill; Robert N Weinreb; Jonathan G Crowston; Esther M Hoffmann; Felipe A Medeiros; Terrence Sejnowski; Michael Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-10       Impact factor: 4.799

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