Literature DB >> 16186350

Unsupervised machine learning with independent component analysis to identify areas of progression in glaucomatous visual fields.

Pamela A Sample1, Catherine Boden, Zuohua Zhang, John Pascual, Te-Won Lee, Linda M Zangwill, Robert N Weinreb, Jonathan G Crowston, Esther M Hoffmann, Felipe A Medeiros, Terrence Sejnowski, Michael Goldbaum.   

Abstract

PURPOSE: To determine whether a variational Bayesian independent component analysis mixture model (vB-ICA-mm), a form of unsupervised machine learning, can be used to identify and quantify areas of progression in standard automated perimetry fields.
METHODS: In an earlier study, it was shown that a model using vB-ICA-mm can separate normal fields from fields with six different patterns of visual field loss related to glaucomatous optic neuropathy (GON) along maximally independent axes. In the present study, an independent group of 191 patient eyes (66 with ocular hypertension (OHT), 12 with suspected glaucoma by field, 61 with suspected glaucoma by disc, and 52 with glaucoma) with five or more standard visual fields under observation for a mean of 6.24 +/- 2.65 years and 8.11 +/- 2.42 visual fields were evaluated with the vB-ICA-mm. In addition, eyes with progressive GON (PGON) were identified (n = 39). Each participant had a series of fields tested, with each field entered independently and placed along the axes of the previously developed model. This allowed change in one pattern of visual field defect (along one axis) to be assessed relative to results other areas of that same field (no change along other axes). Progression was based on a slope falling outside the 5th and the 95th percentile limits of all slopes, with at least two axes not showing such a deviation in a given individual's series of fields. Fields were also scored using Advanced Glaucoma Intervention Study (AGIS) and the Early Manifest Glaucoma Treatment Trial (EMGT) criteria.
RESULTS: Thirty-two of 191 eyes progressed on vB-ICA-mm by this definition. Of the 32, 22 had field loss at baseline, 7 had only GON, 3 were OHTs and 12 were from the 39 eyes (31%) with PGON. The vB-ICA-mm identified a higher percentage of progressing eyes in each diagnostic category than did AGIS or and the EMGT.
CONCLUSIONS: The vB-ICA-mm can quantitatively identify progression in eyes with glaucoma by evaluating change in one or more patterns of the visual field loss while other areas or patterns remain stable. This may enable each eye to contribute to the determination of whether change is caused by true progression or by variability.

Entities:  

Mesh:

Year:  2005        PMID: 16186350      PMCID: PMC1832121          DOI: 10.1167/iovs.04-1168

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  21 in total

1.  The Advanced Glaucoma Intervention Study (AGIS): 7. The relationship between control of intraocular pressure and visual field deterioration.The AGIS Investigators.

Authors: 
Journal:  Am J Ophthalmol       Date:  2000-10       Impact factor: 5.258

Review 2.  The ocular hypertension treatment study: intraocular pressure lowering prevents the development of glaucoma, but does that mean we should treat before the onset of disease?

Authors:  Alan L Robin; Kevin D Frick; Joanne Katz; Donald Budenz; James M Tielsch
Journal:  Arch Ophthalmol       Date:  2004-03

3.  Using unsupervised learning with independent component analysis to identify patterns of glaucomatous visual field defects.

Authors:  Michael H Goldbaum; Pamela A Sample; Zuohua Zhang; Kwokleung Chan; Jiucang Hao; Te-Won Lee; Catherine Boden; Christopher Bowd; Rupert Bourne; Linda Zangwill; Terrence Sejnowski; David Spinak; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-10       Impact factor: 4.799

4.  Infrequent confirmation of visual field progression.

Authors:  Alexander C Lee; Pamela A Sample; Eytan Z Blumenthal; Charles Berry; Linda Zangwill; Robert N Weinreb
Journal:  Ophthalmology       Date:  2002-06       Impact factor: 12.079

5.  The Ocular Hypertension Treatment Study: a randomized trial determines that topical ocular hypotensive medication delays or prevents the onset of primary open-angle glaucoma.

Authors:  Michael A Kass; Dale K Heuer; Eve J Higginbotham; Chris A Johnson; John L Keltner; J Philip Miller; Richard K Parrish; M Roy Wilson; Mae O Gordon
Journal:  Arch Ophthalmol       Date:  2002-06

6.  Comparison of different methods for detecting glaucomatous visual field progression.

Authors:  Eija Vesti; Chris A Johnson; Balwantray C Chauhan
Journal:  Invest Ophthalmol Vis Sci       Date:  2003-09       Impact factor: 4.799

7.  Predictive factors for glaucomatous visual field progression in the Advanced Glaucoma Intervention Study.

Authors:  Kouros Nouri-Mahdavi; Douglas Hoffman; Anne L Coleman; Gang Liu; Gang Li; Douglas Gaasterland; Joseph Caprioli
Journal:  Ophthalmology       Date:  2004-09       Impact factor: 12.079

8.  The Ocular Hypertension Treatment Study: topical medication delays or prevents primary open-angle glaucoma in African American individuals.

Authors:  Eve J Higginbotham; Mae O Gordon; Julia A Beiser; Michael V Drake; G Richard Bennett; M Roy Wilson; Michael A Kass
Journal:  Arch Ophthalmol       Date:  2004-06

9.  Reduction of intraocular pressure and glaucoma progression: results from the Early Manifest Glaucoma Trial.

Authors:  Anders Heijl; M Cristina Leske; Bo Bengtsson; Leslie Hyman; Boel Bengtsson; Mohamed Hussein
Journal:  Arch Ophthalmol       Date:  2002-10

10.  Factors for glaucoma progression and the effect of treatment: the early manifest glaucoma trial.

Authors:  M Cristina Leske; Anders Heijl; Mohamed Hussein; Bo Bengtsson; Leslie Hyman; Eugene Komaroff
Journal:  Arch Ophthalmol       Date:  2003-01
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  20 in total

1.  Using unsupervised learning with independent component analysis to identify patterns of glaucomatous visual field defects.

Authors:  Michael H Goldbaum; Pamela A Sample; Zuohua Zhang; Kwokleung Chan; Jiucang Hao; Te-Won Lee; Catherine Boden; Christopher Bowd; Rupert Bourne; Linda Zangwill; Terrence Sejnowski; David Spinak; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-10       Impact factor: 4.799

2.  Unsupervised learning with independent component analysis can identify patterns of glaucomatous visual field defects.

Authors:  Michael Henry Goldbaum
Journal:  Trans Am Ophthalmol Soc       Date:  2005

Review 3.  Detection of visual field progression in glaucoma with standard achromatic perimetry: a review and practical implications.

Authors:  Kouros Nouri-Mahdavi; Nariman Nassiri; Annette Giangiacomo; Joseph Caprioli
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2011-08-26       Impact factor: 3.117

Review 4.  Functional assessment of glaucoma: Uncovering progression.

Authors:  Rongrong Hu; Lyne Racette; Kelly S Chen; Chris A Johnson
Journal:  Surv Ophthalmol       Date:  2020-04-26       Impact factor: 6.048

5.  Learning from data: recognizing glaucomatous defect patterns and detecting progression from visual field measurements.

Authors:  Siamak Yousefi; Michael H Goldbaum; Madhusudhanan Balasubramanian; Felipe A Medeiros; Linda M Zangwill; Jeffrey M Liebmann; Christopher A Girkin; Robert N Weinreb; Christopher Bowd
Journal:  IEEE Trans Biomed Eng       Date:  2014-04-01       Impact factor: 4.538

6.  Recognizing patterns of visual field loss using unsupervised machine learning.

Authors:  Siamak Yousefi; Michael H Goldbaum; Linda M Zangwill; Felipe A Medeiros; Christopher Bowd
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2014-03-21

7.  Analysis with support vector machine shows HIV-positive subjects without infectious retinitis have mfERG deficiencies compared to normal eyes.

Authors:  Michael H Goldbaum; Irina Falkenstein; Igor Kozak; Jiucang Hao; Dirk-Uwe Bartsch; Terrance Sejnowski; William R Freeman
Journal:  Trans Am Ophthalmol Soc       Date:  2008

8.  Machine learning classifiers detect subtle field defects in eyes of HIV individuals.

Authors:  Igor Kozak; Pamela A Sample; Jiucang Hao; William R Freeman; Robert N Weinreb; Te-Won Lee; Michael H Goldbaum
Journal:  Trans Am Ophthalmol Soc       Date:  2007

9.  Combining functional and structural tests improves the diagnostic accuracy of relevance vector machine classifiers.

Authors:  Lyne Racette; Christine Y Chiou; Jiucang Hao; Christopher Bowd; Michael H Goldbaum; Linda M Zangwill; Te-Won Lee; Robert N Weinreb; Pamela A Sample
Journal:  J Glaucoma       Date:  2010-03       Impact factor: 2.503

10.  Specification of progression in glaucomatous visual field loss, applying locally condensed stimulus arrangements.

Authors:  Jukka Nevalainen; Jens Paetzold; Eleni Papageorgiou; Pamela A Sample; John P Pascual; Elke Krapp; Bettina Selig; Reinhard Vonthein; Ulrich Schiefer
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2009-07-29       Impact factor: 3.117

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