Literature DB >> 20126490

Patterns of glaucomatous visual field loss in sita fields automatically identified using independent component analysis.

Michael H Goldbaum1, Gil-Jin Jang, Chris Bowd, Jiucang Hao, Linda M Zangwill, Jeffrey Liebmann, Christopher Girkin, Tzyy-Ping Jung, Robert N Weinreb, Pamela A Sample.   

Abstract

PURPOSE: To determine if the patterns uncovered with variational Bayesian-independent component analysis-mixture model (VIM) applied to a large set of normal and glaucomatous fields obtained with the Swedish Interactive Thresholding Algorithm (SITA) are distinct, recognizable, and useful for modeling the severity of the field loss.
METHODS: SITA fields were obtained with the Humphrey Visual Field Analyzer (Carl Zeiss Meditec, Inc, Dublin, California) on 1,146 normal eyes and 939 glaucoma eyes from subjects followed by the Diagnostic Innovations in Glaucoma Study and the African Descent and Glaucoma Evaluation Study. VIM modifies independent component analysis (ICA) to develop separate sets of ICA axes in the cluster of normal fields and the 2 clusters of abnormal fields. Of 360 models, the model with the best separation of normal and glaucomatous fields was chosen for creating the maximally independent axes. Grayscale displays of fields generated by VIM on each axis were compared. SITA fields most closely associated with each axis and displayed in grayscale were evaluated for consistency of pattern at all severities.
RESULTS: The best VIM model had 3 clusters. Cluster 1 (1,193) was mostly normal (1,089, 95% specificity) and had 2 axes. Cluster 2 (596) contained mildly abnormal fields (513) and 2 axes; cluster 3 (323) held mostly moderately to severely abnormal fields (322) and 5 axes. Sensitivity for clusters 2 and 3 combined was 88.9%. The VIM-generated field patterns differed from each other and resembled glaucomatous defects (eg, nasal step, arcuate, temporal wedge). SITA fields assigned to an axis resembled each other and the VIM-generated patterns for that axis. Pattern severity increased in the positive direction of each axis by expansion or deepening of the axis pattern.
CONCLUSIONS: VIM worked well on SITA fields, separating them into distinctly different yet recognizable patterns of glaucomatous field defects. The axis and pattern properties make VIM a good candidate as a preliminary process for detecting progression.

Entities:  

Mesh:

Year:  2009        PMID: 20126490      PMCID: PMC2814563     

Source DB:  PubMed          Journal:  Trans Am Ophthalmol Soc        ISSN: 0065-9533


  9 in total

1.  Using machine learning classifiers to identify glaucomatous change earlier in standard visual fields.

Authors:  Pamela A Sample; Michael H Goldbaum; Kwokleung Chan; Catherine Boden; Te-Won Lee; Christiana Vasile; Andreas G Boehm; Terrence Sejnowski; Chris A Johnson; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-08       Impact factor: 4.799

2.  Using unsupervised learning with independent component analysis to identify patterns of glaucomatous visual field defects.

Authors:  Michael H Goldbaum; Pamela A Sample; Zuohua Zhang; Kwokleung Chan; Jiucang Hao; Te-Won Lee; Catherine Boden; Christopher Bowd; Rupert Bourne; Linda Zangwill; Terrence Sejnowski; David Spinak; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-10       Impact factor: 4.799

3.  Unsupervised learning with independent component analysis can identify patterns of glaucomatous visual field defects.

Authors:  Michael Henry Goldbaum
Journal:  Trans Am Ophthalmol Soc       Date:  2005

4.  A new generation of algorithms for computerized threshold perimetry, SITA.

Authors:  B Bengtsson; J Olsson; A Heijl; H Rootzén
Journal:  Acta Ophthalmol Scand       Date:  1997-08

5.  Comparing machine learning classifiers for diagnosing glaucoma from standard automated perimetry.

Authors:  Michael H Goldbaum; Pamela A Sample; Kwokleung Chan; Julia Williams; Te-Won Lee; Eytan Blumenthal; Christopher A Girkin; Linda M Zangwill; Christopher Bowd; Terrence Sejnowski; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-01       Impact factor: 4.799

6.  Variational Learning of Clusters of Undercomplete Nonsymmetric Independent Components.

Authors:  Kwokleung Chan; Te-Won Lee; Terrence J Sejnowski
Journal:  J Mach Learn Res       Date:  2002-08-01       Impact factor: 3.654

7.  Interpretation of automated perimetry for glaucoma by neural network.

Authors:  M H Goldbaum; P A Sample; H White; B Côlt; P Raphaelian; R D Fechtner; R N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  1994-08       Impact factor: 4.799

8.  Unsupervised machine learning with independent component analysis to identify areas of progression in glaucomatous visual fields.

Authors:  Pamela A Sample; Catherine Boden; Zuohua Zhang; John Pascual; Te-Won Lee; Linda M Zangwill; Robert N Weinreb; Jonathan G Crowston; Esther M Hoffmann; Felipe A Medeiros; Terrence Sejnowski; Michael Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-10       Impact factor: 4.799

9.  Using unsupervised learning with variational bayesian mixture of factor analysis to identify patterns of glaucomatous visual field defects.

Authors:  Pamela A Sample; Kwokleung Chan; Catherine Boden; Te-Won Lee; Eytan Z Blumenthal; Robert N Weinreb; Antje Bernd; John Pascual; Jiucang Hao; Terrence Sejnowski; Michael H Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-08       Impact factor: 4.799

  9 in total
  7 in total

Review 1.  Functional assessment of glaucoma: Uncovering progression.

Authors:  Rongrong Hu; Lyne Racette; Kelly S Chen; Chris A Johnson
Journal:  Surv Ophthalmol       Date:  2020-04-26       Impact factor: 6.048

Review 2.  Improving our understanding, and detection, of glaucomatous damage: An approach based upon optical coherence tomography (OCT).

Authors:  Donald C Hood
Journal:  Prog Retin Eye Res       Date:  2016-12-22       Impact factor: 21.198

3.  Progression of patterns (POP): a machine classifier algorithm to identify glaucoma progression in visual fields.

Authors:  Michael H Goldbaum; Intae Lee; Giljin Jang; Madhusudhanan Balasubramanian; Pamela A Sample; Robert N Weinreb; Jeffrey M Liebmann; Christopher A Girkin; Douglas R Anderson; Linda M Zangwill; Marie-Josee Fredette; Tzyy-Ping Jung; Felipe A Medeiros; Christopher Bowd
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-09-25       Impact factor: 4.799

4.  Patterns of functional vision loss in glaucoma determined with archetypal analysis.

Authors:  Tobias Elze; Louis R Pasquale; Lucy Q Shen; Teresa C Chen; Janey L Wiggs; Peter J Bex
Journal:  J R Soc Interface       Date:  2015-02-06       Impact factor: 4.118

5.  Pattern recognition can detect subtle field defects in eyes of HIV individuals without retinitis under HAART.

Authors:  Michael H Goldbaum; Igor Kozak; Jiucang Hao; Pamela A Sample; TeWon Lee; Igor Grant; William R Freeman
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2010-09-24       Impact factor: 3.117

6.  Glaucomatous patterns in Frequency Doubling Technology (FDT) perimetry data identified by unsupervised machine learning classifiers.

Authors:  Christopher Bowd; Robert N Weinreb; Madhusudhanan Balasubramanian; Intae Lee; Giljin Jang; Siamak Yousefi; Linda M Zangwill; Felipe A Medeiros; Christopher A Girkin; Jeffrey M Liebmann; Michael H Goldbaum
Journal:  PLoS One       Date:  2014-01-30       Impact factor: 3.240

7.  Unsupervised Gaussian Mixture-Model With Expectation Maximization for Detecting Glaucomatous Progression in Standard Automated Perimetry Visual Fields.

Authors:  Siamak Yousefi; Madhusudhanan Balasubramanian; Michael H Goldbaum; Felipe A Medeiros; Linda M Zangwill; Robert N Weinreb; Jeffrey M Liebmann; Christopher A Girkin; Christopher Bowd
Journal:  Transl Vis Sci Technol       Date:  2016-05-03       Impact factor: 3.283

  7 in total

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