Literature DB >> 18055807

Assessing visual field clustering schemes using machine learning classifiers in standard perimetry.

Catherine Boden1, Kwokleung Chan, Pamela A Sample, Jiucang Hao, Te-Wan Lee, Linda M Zangwill, Robert N Weinreb, Michael H Goldbaum.   

Abstract

PURPOSE: To compare machine learning classifiers trained on three clustering schemes to determine whether distinguishing healthy eyes from those with glaucomatous optic neuropathy (GON) can be optimized by training with clustered data.
METHODS: Two machine learning classifiers-quadratic discriminant analysis (QDA) and support vector machines with Gaussian kernel (SVMg)-were trained separately using standard perimetry data from the Diagnostic Innovations in Glaucoma Study (DIGS), clustered using three clustering schemes on a training data set (123 eyes/123 glaucoma patients with GON; 135 eyes/135 normal control subjects). Trained classifiers were then applied to an independent data set containing 69 eyes of 69 glaucoma patients with early visual field loss and 83 eyes of 83 normal control subjects. Two control conditions were included: unclustered data and a random assignment of locations to clusters.
RESULTS: Areas under the receiver operating characteristic (ROC) curve ranged from 0.85 (SVMg, thresholds clustered by Glaucoma Hemifield Test sectors) to 0.92 (QDA, thresholds clustered by Garway-Heath mapping) for the training data set. Use of clustered data showed no significant optimization of sensitivity over use of unclustered data, and no single clustering method resulted in significantly higher performance in the independent data set. Sensitivities tended to be higher with QDA than with SVMg, regardless of specificity cutoff and clustering
CONCLUSIONS: QDA performed better with the early glaucoma data set than did the SVMg. Clustering may be advantageous when data-dimension reduction is needed-for example, when combining field results with other high-dimensional data (e.g., structural imaging data)-but it is not necessary for visual field data alone.

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Year:  2007        PMID: 18055807      PMCID: PMC2647327          DOI: 10.1167/iovs.06-0897

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  43 in total

Review 1.  Drug design by machine learning: support vector machines for pharmaceutical data analysis.

Authors:  R Burbidge; M Trotter; B Buxton; S Holden
Journal:  Comput Chem       Date:  2001-12

2.  Comparing neural networks and linear discriminant functions for glaucoma detection using confocal scanning laser ophthalmoscopy of the optic disc.

Authors:  Christopher Bowd; Kwokleung Chan; Linda M Zangwill; Michael H Goldbaum; Te-Won Lee; Terrence J Sejnowski; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-11       Impact factor: 4.799

3.  Using machine learning classifiers to identify glaucomatous change earlier in standard visual fields.

Authors:  Pamela A Sample; Michael H Goldbaum; Kwokleung Chan; Catherine Boden; Te-Won Lee; Christiana Vasile; Andreas G Boehm; Terrence Sejnowski; Chris A Johnson; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-08       Impact factor: 4.799

4.  Comparing machine learning classifiers for diagnosing glaucoma from standard automated perimetry.

Authors:  Michael H Goldbaum; Pamela A Sample; Kwokleung Chan; Julia Williams; Te-Won Lee; Eytan Blumenthal; Christopher A Girkin; Linda M Zangwill; Christopher Bowd; Terrence Sejnowski; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2002-01       Impact factor: 4.799

5.  Retinal nerve fiber layer thickness measured with optical coherence tomography is related to visual function in glaucomatous eyes.

Authors:  Tarek A El Beltagi; Christopher Bowd; Catherine Boden; Payam Amini; Pamela A Sample; Linda M Zangwill; Robert N Weinreb
Journal:  Ophthalmology       Date:  2003-11       Impact factor: 12.079

6.  Comparison of machine learning and traditional classifiers in glaucoma diagnosis.

Authors:  Kwokleung Chan; Te-Won Lee; Pamela A Sample; Michael H Goldbaum; Robert N Weinreb; Terrence J Sejnowski
Journal:  IEEE Trans Biomed Eng       Date:  2002-09       Impact factor: 4.538

7.  Neural networks to identify glaucomatous visual field progression.

Authors:  Amy Lin; Douglas Hoffman; Douglas E Gaasterland; Joseph Caprioli
Journal:  Am J Ophthalmol       Date:  2003-01       Impact factor: 5.258

8.  Heidelberg retina tomograph measurements of the optic disc and parapapillary retina for detecting glaucoma analyzed by machine learning classifiers.

Authors:  Linda M Zangwill; Kwokleung Chan; Christopher Bowd; Jicuang Hao; Te-Won Lee; Robert N Weinreb; Terrence J Sejnowski; Michael H Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-09       Impact factor: 4.799

9.  Confocal scanning laser ophthalmoscopy classifiers and stereophotograph evaluation for prediction of visual field abnormalities in glaucoma-suspect eyes.

Authors:  Christopher Bowd; Linda M Zangwill; Felipe A Medeiros; Jiucang Hao; Kwokleung Chan; Te-Won Lee; Terrence J Sejnowski; Michael H Goldbaum; Pamela A Sample; Jonathan G Crowston; Robert N Weinreb
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-07       Impact factor: 4.799

10.  Using unsupervised learning with variational bayesian mixture of factor analysis to identify patterns of glaucomatous visual field defects.

Authors:  Pamela A Sample; Kwokleung Chan; Catherine Boden; Te-Won Lee; Eytan Z Blumenthal; Robert N Weinreb; Antje Bernd; John Pascual; Jiucang Hao; Terrence Sejnowski; Michael H Goldbaum
Journal:  Invest Ophthalmol Vis Sci       Date:  2004-08       Impact factor: 4.799

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  3 in total

1.  Machine Learning Models for Diagnosing Glaucoma from Retinal Nerve Fiber Layer Thickness Maps.

Authors:  Peiyu Wang; Jian Shen; Ryuna Chang; Maemae Moloney; Mina Torres; Bruce Burkemper; Xuejuan Jiang; Damien Rodger; Rohit Varma; Grace M Richter
Journal:  Ophthalmol Glaucoma       Date:  2019-08-23

2.  Glaucoma Diagnostic Accuracy of Machine Learning Classifiers Using Retinal Nerve Fiber Layer and Optic Nerve Data from SD-OCT.

Authors:  Kleyton Arlindo Barella; Vital Paulino Costa; Vanessa Gonçalves Vidotti; Fabrício Reis Silva; Marcelo Dias; Edson Satoshi Gomi
Journal:  J Ophthalmol       Date:  2013-11-28       Impact factor: 1.909

3.  An Open-source Static Threshold Perimetry Test Using Remote Eye-tracking (Eyecatcher): Description, Validation, and Preliminary Normative Data.

Authors:  Pete R Jones
Journal:  Transl Vis Sci Technol       Date:  2020-07-13       Impact factor: 3.283

  3 in total

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