| Literature DB >> 31133028 |
Lei Zhang1,2, Xiang Meng3, Xin-Wei Zhu1,4, Deng-Cheng Yang3, Ran Chen3, Yong Jiang5, Tao Xu6,7.
Abstract
There is growing evidence that regions of the genome that cannot encode proteins play an important role in diseases. These regions are usually transcribed into long non-coding RNAs (lncRNAs). LncRNAs, little or no coding potential, are defined as capped transcripts longer than 200 nucleotides. New sequencing technologies have shown that a large number of aberrantly expressed lncRNAs are associated with multiple cancer types and indicated they have emerged as an important class of pervasive genes during the development and progression of cancer. However, the underlying mechanism in cancer is still unknown. Therefore, it is necessary to elucidate the lncRNA function. Notably, many lncRNAs dysregulation are associated with Oral squamous cell carcinoma (OSCC) and affect various aspects of cellular homeostasis, including proliferation, survival, migration or genomic stability. This review expounds the up- or down-regulation of lncRNAs in OSCC and the molecular mechanisms by which lncRNAs perform their function in the malignant cell. Finally, the potential of lncRNAs as non-invasive biomarkers for OSCC diagnosis are also described. LncRNAs hold promise as prospective novel therapeutic targets, but more research is needed to gain a better understanding of their biologic function.Entities:
Keywords: Biomarker; Long non-coding RNAs; Oral squamous cell carcinoma (OSCC); Tumorigenesis
Mesh:
Substances:
Year: 2019 PMID: 31133028 PMCID: PMC6535863 DOI: 10.1186/s12943-019-1021-3
Source DB: PubMed Journal: Mol Cancer ISSN: 1476-4598 Impact factor: 27.401
Fig. 1LncRNAs exert functions through a variety of signaling pathways in the human body. a miRNA sponge. MIAT, acting as a molecular sponge, binds to miR-150-5p, thereby upregulating the level of miR-150-5p target gene. b mRNA stability/degradation. LncRNA binding to mRNA may stabilize (e.g., BACE1-AS prevents miRNA-induced repression of BACE1 transcript) or decay target transcripts. c Translation. LncRNAs promote (like antisense Uchl) or repress (like lincRNA-p21) translation of transcripts. d Alternative splicing. MALAT1 acting as scaffold for SR proteins regulates pre-mRNA alternative splicing. e Transcription. PACER (lethe and p50-associated Cox-2 extragenic RNA) directly interacts with different subunits of NF-κB, thus preventing it from binding to the Cox-2 promoter. THRIL, together with heterogeneous nuclear ribonucleoproteins (hnRNPs), acts as RNA-protein complex and binds to TNF-α promoter and induces TNF-α expression. f Epigenetic imprinting. Working models of gene regulation by cis- (a) and trans-acting (b) lncRNAs. LncRNAs, such as Xist/RepA, Air, HOTAIR, and Kcnq1ot1, may act as docking platforms for the chromatin remodeling complex, polycomb repressive complex (PRC2) 2, which methylates histone H3 at lysine 27 (H3K27me3), leading to a repression or gain of transcriptional activity, respectively
Fig. 2The steroid receptor RNA activator (SRA) lncRNA contains 4 subdomains. The human SRA has a length of 870 nt, organized into 4 sub-domains and 25 helices. Four biochemical techniques (SHAPE, in-line, DMS and RNase V1) were used to obtain the secondary structure. Blue, domain I; green, domain II; black, domain III; yellow, domain IV
Main methods to detect and quantify noncoding RNAs
| Method | Advantages | Limitations | Reference (PMID) | |
|---|---|---|---|---|
| ncRNA | Northern blot | Gold standard; Specificity | Limited sensitivity; Low throughput; Time consuming; Limited for quantification | ([ ([ |
| ncRNA | SPR | Sensitivity | Expensive read-out system; High background signal; Limited throughput | ([ ([ |
| ncRNA | In situ hybridization | Locates miRNA in tissue and cell compartments | Low throughput; Invasive sample collection; Limited sensitivity; Limited quantification | ([ ([ |
| ncRNA | Microarray | High throughput | Fair specificity; Medium sensitivity; Limited quantification | ([ ([ |
| ncRNA | Bioluminescence | Sensitivity | High costs; Difficult to standardize | ([ |
| ncRNA | Electrochemical detection | Cost-effective sensitive sensors | Verified background signal; Special nanoparticle labels | ([ ([ |
| ncRNA | RNA sequencing | High throughput; Sensitivity; Specificity | Complex data analysis; High costs | ([ ([ |
| ncRNA | Nanopore-based RNA detection | Single-molecule detection; Contractible; Possibilities for high throughput; Rapid | Requiring sophisticated detection instruments; Complex data analysis | ([ ([ |
| ncRNA | qRT-PCR | Semi-high throughput; Good quantification; Amplification enables; Sensitivity | Difficult to distinguish single-nucleotide differences; Not for ncRNA discovery | ([ ([ |
| ncRNA | Flow cytometry-FISH | High throughput detection of in situ hybridization | No quantification; No location of the ncRNA | ([ |
| ncRNA | Nanoresonator chip | Quantitative sensitivity; Specificity | Limited reproducibility; Complex production process for nanoresonators | ([ |
| ncRNA | Base stacking hybridization coupling with time-resolved fluorescence technology | Rapid, Universal label; Sensitivity | Needs fluorescent tag | ([ |
| ncRNA | Scanometric miRNA array | Sensitivity | High background signal | ([ |
| ncRNA | Fluorescence quenching on graphene oxide | Amplification process; Sensitivity | High costs | ([ |
LNA Locked nucleic acid, ncRNA Noncoding RNA, qRT-PCR Quantitative reverse transcription PCR, LOD Limit of detection, SPR Surface plasmon resonance
Fig. 3LncRNAs dysregulation is associated with a variety of diseases in humans. LncRNAs can affect human health through a variety of signaling pathways which can be divided into cytoplasmic signaling pathways and intranuclear signaling pathways. Cytoplasmic signaling pathways include mRNA stability, miRNA sponge and mRNA translation. Intranuclear signaling pathways include splicing, histone modification, chromatin interaction and transcriptional regulator
Fig. 4Overview of the role of lncRNAs with miRNAs in OSCC cells
The expression of LncRNA in OSCC
| LncRNA | Cytology | Location | Expression | Function in tumorigenesis | Reference (PMID) |
|---|---|---|---|---|---|
| MALAT1 | 11q13.1 | Tca8113, SCC-25, CAL-27 and HN5 cells | + | Biomarker | ([ ([ |
| CCAT1 | 8q24.21 | OSCC tissues/HIOECs | + | Biomarker | ([ |
| MEG3 | 14q32.3 | OSCC tissues/SCC-15 and CAL-27 cells | – | Biomarker, Tumor suppressor | ([ ([ |
| UCA1 | 19p13.12 | SCC-15 and CAL-27/Tca8113, TSCCA, CAL-27 and SCC-9 cells | + | Biomarker, Oncogene | ([ ([ |
| AC132217.4 | – | UM-SCC6H and SCC-090 cells | + | Biomarker | ([ |
| HNF1A-AS1 | 12q24.31 | OSCC tissues and cell lines | + | Oncogene | ([ |
| HAS2-AS1 | 8q24.13 | SCC-9 and CAL-27 cells | + | Biomarker | ([ |
| HOTAIR | 12q13.13 | TSCCA, Tca8223, KB and CAL-27 cells | + | Biomarker, Oncogene | ([ ([ |
| Linc-RoR | 18q21.31 | OSCC tissues | + | Biomarker | ([ |
| LINC00668 | 18p11.31 | SCC-4, SCC-9, SCC-1, SCC-25, TU-183, HSU-3, FADU, OEC-M1, SNU-1041, SCC-15 cells | + | Oncogene | ([ |
| NEAT1 | 11q13.1 | HN-4, Tca-8113, UM-SCC-1, CAL-27, SCC-25 and SCCKN cells | + | Biomarker | ([ |
| FTH1P3 | 2p23.3 | SCC-4, SCC-9, SCC-1, SCC-25, TU-183, HSU-3, FADU, OEC-M1, SNU-1041, and SCC-15 cells | + | Oncogene | ([ |
| DLEU1 | 13q14.2-q14.3 | SAS, Ca9–22, HSC-3, KON, MOT, HSC-4, OSC-19 and MON2 cells | + | Biomarker, Oncogene | ([ |
| CASC2 | 10q26.11 | SCC-090 and SCC-25 cells | – | Tumor suppressor | ([ |
| FLJ22447 | 14q23.1-q23.2 | HSC-3 cells | + | – | ([ |
Upregulation: +; Downregulation: -
The targets of LncRNAs in OSCC
| LncRNA | Targets | Location | Reference (PMID) |
|---|---|---|---|
| MALAT1 | miR-125b | Tca8113, SCC-25, CAL-27 and HN5 cells | ([ ([ |
| CCAT1 | miR155-5p, let7b-5p, miR490-3p, miR218-5p | OSCC tissues/HIOECs | ([ ([ |
| MEG3 | miR-26a | OSCC tissues/SCC-15 and CAL-27 cells | ([ ([ |
| UCA1 | miR-184 | SCC-15 and CAL-27/Tca8113, TSCCA, CAL-27 and SCC-9 cells | ([ ([ |
| AC132217.4 | IGF2 | UM-SCC6H and SCC-090 cells | ([ |
| HOTAIR | EZH2 and H3K27me3, MCL-1 | TSCCA, Tca8223, KB and CAL-27 cells | ([ ([ |
| Linc-RoR | miR-145-5p | OSCC tissues | ([ |
| LINC00668 | miR-297 | SCC-4, SCC-9, SCC-1, SCC-25, TU-183, HSU-3, FADU, OEC-M1, SNU-1041 and SCC-15 cells | ([ |
| NEAT1 | miR-365 | HN4, Tca8113, UM-SCC-1, Cal-27, SCC-25 and SCCKN cells | ([ |
| FTH1P3 | miR-224-5p | SCC-4, SCC-9, SCC-1, SCC-25, TU-183, HSU-3, FADU, OEC-M1, SNU-1041 and SCC-15 cells | ([ |
| DLEU1 | miR-490-3p | SAS, Ca9–22, HSC-3, KON, MOT, HSC-4, OSC-19 and MON2 cells | ([ |
| CASC2 | miR-21 | SCC-090 and SCC-25 cells | ([ |
Fig. 5LncRNAs trigger OSCC through multiple regulatory signaling pathways. A variety of methods have been used to detect upregulation or downregulation of multiple lncRNAs in OSCC patients. These lncRNAs are affected by upstream regulatory factors or affect downstream factors to trigger carcinogenic or tumor suppressor signaling pathways
The main roles of the exemplified lncRNAs
| LncRNA | Molecular functions | Mechanism |
|---|---|---|
| MALAT1 | RNA splicing regulator | Sponges miR-125b and promotes STAT3 expression. |
| CCAT1 | miRNA sponge | Sponges for miR-155-5p and let7b-5p. |
| MEG3 | Transcriptional repressor | Suppresses Tumor via Wnt/β-catenin signaling pathway. |
| NEAT1 | Chromatin modification | Downregulates miR-365 expression. |
| TUG1 | miRNA sponge | Promotes OSCC via TUG1/miR-219/FMNL2 axis. |
| UCA1 | Transcriptional activator | Promotes tumor invasion and metastasis possibly through Wnt/β-catenin signaling pathway. |
| Linc-RoR | miRNA sponge | Sponges for miR-145 to inhibit the expression levels of OCT4, NONOG and SOX2. |
LncRNA biomarker for different cancers
| LncRNA | Ensembl ID | Sequence Name | Biomarker in cancers | Reference (PMID) |
|---|---|---|---|---|
| HOTAIR | ENSG00000228630 | hotair_hg_1 | BrC, HCC, CoC, PaC, LuC, OC | ([ |
| GAS5 | ENSG00000234741 | gas5_homosapiens_1 | BrC, PrC, LuC, MPM | ([ |
| MALAT1 | ENSG00000251562 | malat1_homosapiens_1 | LuC, BlC, BrC, CeC, CoC, CoC, EnC | ([ |
| CCAT1 | ENSG00000247844 | ccat1_hg_1 | CoC, GasC, HCC, GalC, OC, BrC, LuC | ([ |
| MEG3 | ENSG00000214548 | meg3_homosapiens_1 | BlC, BMC, BrC, CeC, CoC, HCC, LuC, MC, PrC | ([ |
| UCA1 | ENSG00000214049 | UCA1_hg_1 | BlC, BrC, CoC, GasC, OC | ([ |
| NEAT1 | ENSG00000245532 | neat1_homosapiens_1/2 | LuC, EsC, LaC, CoC, HCC, PrC, BrC | ([ |
BlC Bladder cancer, BMC Bone marrow cancer, BrC Breast cancer, CeC Cervical cancer, CoC Colorectal cancer, EnC Endometrial cancer, EsC Esophageal cancer, GalC Gallbladder cancer, GasC Gastric cancer, HCC Hepatocellular cancer, LaC Laryngeal cancer, LuC Lung cancer, , MPM Malignant pleural mesothelioma, MC Meninges cancer, OC Ovarian cancer, PaC Pancreatic cancer, PrC Prostate cancer
Exosome lncRNAs in different cancers
| LncRNA | Cancer type | Function in cancer cells | Reference (PMID) |
|---|---|---|---|
| MALAT1 | LuC | Proliferation, migration | ([ |
| UCA1 | BlC; CoC | Proliferation, migration, invasion | ([ ([ |
| ZFAS1 | GasC; | Proliferation, migration | ([ |
| CRNDE-h | CoC | Metastasis | ([ |
| HOTAIR | BlC | Migration, invasion | ([ |
| 91H | CoC | Migration, invasion | ([ |
| H19 | HCC | Angiogenesis | ([ |
| CCAT | Glioma | Angiogenesis | ([ |
| LINC-ROR | HCC | Tumor resistance regulator | ([ |
| ARSR | RC | Sunitinib resistance | ([ |
BlC Bladder cancer, CoC Colorectal cancer, GasC Gastric cancer, HCC Hepatocellular cancer, LuC Lung cancer, RC Renal cancer