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Literature DB >> 24296535

Long non-coding RNAs: new players in cell differentiation and development.

Abstract

Genomes of multicellular organisms are characterized by the pervasive expression of different types of non-coding RNAs (ncRNAs). Long ncRNAs (lncRNAs) belong to a novel heterogeneous class of ncRNAs that includes thousands of different species. lncRNAs have crucial roles in gene expression control during both developmental and differentiation processes, and the number of lncRNA species increases in genomes of developmentally complex organisms, which highlights the importance of RNA-based levels of control in the evolution of multicellular organisms. In this Review, we describe the function of lncRNAs in developmental processes, such as in dosage compensation, genomic imprinting, cell differentiation and organogenesis, with a particular emphasis on mammalian development.

Entities: Chemical

Mesh：

Substances：
RNA, Long Noncoding

Year: 2013 PMID： 24296535 DOI： 10.1038/nrg3606

Source DB: PubMed Journal: Nat Rev Genet ISSN： 1471-0056 Impact factor: 53.242

128 in total

1. Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification.

Authors: Tatsuya Ohhata; Yuko Hoki; Hiroyuki Sasaki; Takashi Sado
Journal: Development Date: 2007-12-05 Impact factor: 6.868

2. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.

Authors: Marcel E Dinger; Paulo P Amaral; Tim R Mercer; Ken C Pang; Stephen J Bruce; Brooke B Gardiner; Marjan E Askarian-Amiri; Kelin Ru; Giulia Soldà; Cas Simons; Susan M Sunkin; Mark L Crowe; Sean M Grimmond; Andrew C Perkins; John S Mattick
Journal: Genome Res Date: 2008-06-18 Impact factor: 9.043

3. Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway.

Authors: Ryu-Suke Nozawa; Koji Nagao; Ken-Taro Igami; Sachiko Shibata; Natsuko Shirai; Naohito Nozaki; Takashi Sado; Hiroshi Kimura; Chikashi Obuse
Journal: Nat Struct Mol Biol Date: 2013-03-31 Impact factor: 15.369

4. Targeted disruption of Hotair leads to homeotic transformation and gene derepression.

Authors: Lingjie Li; Bo Liu; Orly L Wapinski; Miao-Chih Tsai; Kun Qu; Jiajing Zhang; Jeff C Carlson; Meihong Lin; Fengqin Fang; Rajnish A Gupta; Jill A Helms; Howard Y Chang
Journal: Cell Rep Date: 2013-09-26 Impact factor: 9.423

5. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.

Authors: Alexander D Ramos; Aaron Diaz; Abhinav Nellore; Ryan N Delgado; Ki-Youb Park; Gabriel Gonzales-Roybal; Michael C Oldham; Jun S Song; Daniel A Lim
Journal: Cell Stem Cell Date: 2013-04-11 Impact factor: 24.633

6. An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.

Authors: Christine M Clemson; John N Hutchinson; Sergio A Sara; Alexander W Ensminger; Archa H Fox; Andrew Chess; Jeanne B Lawrence
Journal: Mol Cell Date: 2009-02-12 Impact factor: 17.970

7. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin.

Authors: Takashi Nagano; Jennifer A Mitchell; Lionel A Sanz; Florian M Pauler; Anne C Ferguson-Smith; Robert Feil; Peter Fraser
Journal: Science Date: 2008-11-06 Impact factor: 47.728

8. Regulation of imprinted X-chromosome inactivation in mice by Tsix.

Authors: T Sado; Z Wang; H Sasaki; E Li
Journal: Development Date: 2001-04 Impact factor: 6.868

9. A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy.

Authors: Daphne S Cabianca; Valentina Casa; Beatrice Bodega; Alexandros Xynos; Enrico Ginelli; Yujiro Tanaka; Davide Gabellini
Journal: Cell Date: 2012-04-26 Impact factor: 41.582

10. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs.

Authors: Aurélie Kapusta; Zev Kronenberg; Vincent J Lynch; Xiaoyu Zhuo; LeeAnn Ramsay; Guillaume Bourque; Mark Yandell; Cédric Feschotte
Journal: PLoS Genet Date: 2013-04-25 Impact factor: 5.917

1238 in total

Review 1. The roles and regulation of Polycomb complexes in neural development.

Authors: Matthew Corley; Kristen L Kroll
Journal: Cell Tissue Res Date: 2014-11-01 Impact factor: 5.249

Review 2. Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Authors: Björn Reinius; Rickard Sandberg
Journal: Nat Rev Genet Date: 2015-10-07 Impact factor: 53.242

3. Discovery and characterization of the first non-coding RNA that regulates gene expression, micF RNA: A historical perspective.

Authors: Nicholas Delihas
Journal: World J Biol Chem Date: 2015-11-26

Long non-coding RNAs: new players in cell differentiation and development.

1. Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification.

2. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation.

3. Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway.

4. Targeted disruption of Hotair leads to homeotic transformation and gene derepression.

5. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.

6. An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.

7. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin.

8. Regulation of imprinted X-chromosome inactivation in mice by Tsix.

9. A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy.

10. Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs.

Review 1. The roles and regulation of Polycomb complexes in neural development.

Review 2. Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

3. Discovery and characterization of the first non-coding RNA that regulates gene expression, micF RNA: A historical perspective.

4. Role of TRPV4 in matrix stiffness-induced expression of EMT-specific LncRNA.

Review 5. Non-Coding RNAs in Endometrial Physiopathology.

6. NEAT1 accelerates the progression of liver fibrosis via regulation of microRNA-122 and Kruppel-like factor 6.

Review 7. Teaching an Old Virus New Tricks: A Review on New Approaches to Study Age-Old Questions in Influenza Biology.

8. Long noncoding RNA SYISL regulates myogenesis by interacting with polycomb repressive complex 2.

Review 9. An emerging understanding of long noncoding RNAs in kidney cancer.

Review 10. Faulty RNA splicing: consequences and therapeutic opportunities in brain and muscle disorders.