Literature DB >> 29249332

Nuclear Long Noncoding RNAs: Key Regulators of Gene Expression.

Qinyu Sun1, Qinyu Hao1, Kannanganattu V Prasanth2.   

Abstract

A significant portion of the human genome encodes genes that transcribe long nonprotein-coding RNAs (lncRNAs). A large number of lncRNAs localize in the nucleus, either enriched on the chromatin or localized to specific subnuclear compartments. Nuclear lncRNAs participate in several biological processes, including chromatin organization, and transcriptional and post-transcriptional gene expression, and also act as structural scaffolds of nuclear domains. Here, we highlight recent studies demonstrating the role of lncRNAs in regulating gene expression and nuclear organization in mammalian cells. In addition, we update current knowledge about the involvement of the most-abundant and conserved lncRNA, metastasis-associated lung adenocarcinoma transcript 1 (MALAT1), in gene expression control.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29249332      PMCID: PMC6002860          DOI: 10.1016/j.tig.2017.11.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  179 in total

1.  Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation.

Authors:  Juan R Alvarez-Dominguez; Wenqian Hu; Bingbing Yuan; Jiahai Shi; Staphany S Park; Austin A Gromatzky; Alexander van Oudenaarden; Harvey F Lodish
Journal:  Blood       Date:  2013-11-07       Impact factor: 22.113

2.  Noncoding transcripts in sense and antisense orientation regulate the epigenetic state of ribosomal RNA genes.

Authors:  H Bierhoff; K Schmitz; F Maass; J Ye; I Grummt
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2011-04-18

3.  lncRNA directs cooperative epigenetic regulation downstream of chemokine signals.

Authors:  Zhen Xing; Aifu Lin; Chunlai Li; Ke Liang; Shouyu Wang; Yang Liu; Peter K Park; Li Qin; Yongkun Wei; David H Hawke; Mien-Chie Hung; Chunru Lin; Liuqing Yang
Journal:  Cell       Date:  2014-11-13       Impact factor: 41.582

4.  Stability of MALAT-1, a nuclear long non-coding RNA in mammalian cells, varies in various cancer cells.

Authors:  H Tani; Y Nakamura; K Ijiri; N Akimitsu
Journal:  Drug Discov Ther       Date:  2010-08

5.  The Ribonucleic Complex HuR-MALAT1 Represses CD133 Expression and Suppresses Epithelial-Mesenchymal Transition in Breast Cancer.

Authors:  Elisa Latorre; Stephana Carelli; Ivan Raimondi; Vito D'Agostino; Ilaria Castiglioni; Chiara Zucal; Giacomina Moro; Andrea Luciani; Giorgio Ghilardi; Eleonora Monti; Alberto Inga; Anna Maria Di Giulio; Alfredo Gorio; Alessandro Provenzani
Journal:  Cancer Res       Date:  2016-04-20       Impact factor: 12.701

6.  Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MENβ noncoding RNAs.

Authors:  Jessica A Brown; Max L Valenstein; Therese A Yario; Kazimierz T Tycowski; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-05       Impact factor: 11.205

7.  Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts.

Authors:  Jeremy R Sanford; Xin Wang; Matthew Mort; Natalia Vanduyn; David N Cooper; Sean D Mooney; Howard J Edenberg; Yunlong Liu
Journal:  Genome Res       Date:  2008-12-30       Impact factor: 9.043

8.  The transcriptional landscape of the mammalian genome.

Authors:  P Carninci; T Kasukawa; S Katayama; J Gough; M C Frith; N Maeda; R Oyama; T Ravasi; B Lenhard; C Wells; R Kodzius; K Shimokawa; V B Bajic; S E Brenner; S Batalov; A R R Forrest; M Zavolan; M J Davis; L G Wilming; V Aidinis; J E Allen; A Ambesi-Impiombato; R Apweiler; R N Aturaliya; T L Bailey; M Bansal; L Baxter; K W Beisel; T Bersano; H Bono; A M Chalk; K P Chiu; V Choudhary; A Christoffels; D R Clutterbuck; M L Crowe; E Dalla; B P Dalrymple; B de Bono; G Della Gatta; D di Bernardo; T Down; P Engstrom; M Fagiolini; G Faulkner; C F Fletcher; T Fukushima; M Furuno; S Futaki; M Gariboldi; P Georgii-Hemming; T R Gingeras; T Gojobori; R E Green; S Gustincich; M Harbers; Y Hayashi; T K Hensch; N Hirokawa; D Hill; L Huminiecki; M Iacono; K Ikeo; A Iwama; T Ishikawa; M Jakt; A Kanapin; M Katoh; Y Kawasawa; J Kelso; H Kitamura; H Kitano; G Kollias; S P T Krishnan; A Kruger; S K Kummerfeld; I V Kurochkin; L F Lareau; D Lazarevic; L Lipovich; J Liu; S Liuni; S McWilliam; M Madan Babu; M Madera; L Marchionni; H Matsuda; S Matsuzawa; H Miki; F Mignone; S Miyake; K Morris; S Mottagui-Tabar; N Mulder; N Nakano; H Nakauchi; P Ng; R Nilsson; S Nishiguchi; S Nishikawa; F Nori; O Ohara; Y Okazaki; V Orlando; K C Pang; W J Pavan; G Pavesi; G Pesole; N Petrovsky; S Piazza; J Reed; J F Reid; B Z Ring; M Ringwald; B Rost; Y Ruan; S L Salzberg; A Sandelin; C Schneider; C Schönbach; K Sekiguchi; C A M Semple; S Seno; L Sessa; Y Sheng; Y Shibata; H Shimada; K Shimada; D Silva; B Sinclair; S Sperling; E Stupka; K Sugiura; R Sultana; Y Takenaka; K Taki; K Tammoja; S L Tan; S Tang; M S Taylor; J Tegner; S A Teichmann; H R Ueda; E van Nimwegen; R Verardo; C L Wei; K Yagi; H Yamanishi; E Zabarovsky; S Zhu; A Zimmer; W Hide; C Bult; S M Grimmond; R D Teasdale; E T Liu; V Brusic; J Quackenbush; C Wahlestedt; J S Mattick; D A Hume; C Kai; D Sasaki; Y Tomaru; S Fukuda; M Kanamori-Katayama; M Suzuki; J Aoki; T Arakawa; J Iida; K Imamura; M Itoh; T Kato; H Kawaji; N Kawagashira; T Kawashima; M Kojima; S Kondo; H Konno; K Nakano; N Ninomiya; T Nishio; M Okada; C Plessy; K Shibata; T Shiraki; S Suzuki; M Tagami; K Waki; A Watahiki; Y Okamura-Oho; H Suzuki; J Kawai; Y Hayashizaki
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

9.  The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, reducing the expression of RASSF1A and increasing cell proliferation.

Authors:  Felipe C Beckedorff; Ana C Ayupe; Renan Crocci-Souza; Murilo S Amaral; Helder I Nakaya; Daniela T Soltys; Carlos F M Menck; Eduardo M Reis; Sergio Verjovski-Almeida
Journal:  PLoS Genet       Date:  2013-08-22       Impact factor: 5.917

10.  p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Authors:  Michal Krawczyk; Beverly M Emerson
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

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  192 in total

1.  A novel antisense RNA ASPACT confers multi-level suppression of PACT and associated signalling.

Authors:  Yu-Ping Kuo; Chung-Pei Ma; Hui-Wen Chen; Yi-Tung Chen; Yi-Hsuan Lai; Hsuan Liu; Rei-Lin Kuo; Bertrand Chin-Ming Tan
Journal:  RNA Biol       Date:  2019-06-12       Impact factor: 4.652

Review 2.  Genetics and epigenetic factors of Wilson disease.

Authors:  Valentina Medici; Janine M LaSalle
Journal:  Ann Transl Med       Date:  2019-04

Review 3.  Epigenetic control of embryo-uterine crosstalk at peri-implantation.

Authors:  Shuangbo Kong; Chan Zhou; Haili Bao; Zhangli Ni; Mengying Liu; Bo He; Lin Huang; Yang Sun; Haibin Wang; Jinhua Lu
Journal:  Cell Mol Life Sci       Date:  2019-07-27       Impact factor: 9.261

4.  LncRNA RP11-19E11 is an E2F1 target required for proliferation and survival of basal breast cancer.

Authors:  A Giro-Perafita; L Luo; A Khodadadi-Jamayran; M Thompson; B Akgol Oksuz; A Tsirigos; B D Dynlacht; I Sánchez; F J Esteva
Journal:  NPJ Breast Cancer       Date:  2020-01-06

5.  Metastasis-associated lung adenocarcinoma transcript 1 regulates tumor progression: old wine in a new bottle.

Authors:  Xiaoyun He; Qijia Yan; Gaoyan Kuang; Yixuan Wang; Pengfei Cao; Chunlin Ou
Journal:  J Thorac Dis       Date:  2018-04       Impact factor: 2.895

6.  LINC00174 is a novel prognostic factor in thymic epithelial tumors involved in cell migration and lipid metabolism.

Authors:  Claudia Tito; Federica Ganci; Andrea Sacconi; Silvia Masciarelli; Giulia Fontemaggi; Claudio Pulito; Enzo Gallo; Valentina Laquintana; Alessia Iaiza; Luciana De Angelis; Anna Benedetti; Jessica Cacciotti; Selenia Miglietta; Maria Bellenghi; Alessandra Carè; Alessandro Fatica; Daniele Diso; Marco Anile; Vincenzo Petrozza; Francesco Facciolo; Gabriele Alessandrini; Edoardo Pescarmona; Federico Venuta; Mirella Marino; Giovanni Blandino; Francesco Fazi
Journal:  Cell Death Dis       Date:  2020-11-07       Impact factor: 8.469

7.  LncRNA MALAT1 regulates trophoblast cells migration and invasion via miR-206/IGF-1 axis.

Authors:  Hai-Ying Wu; Xiao-Hui Wang; Kan Liu; Jing-Li Zhang
Journal:  Cell Cycle       Date:  2019-11-27       Impact factor: 4.534

8.  Measuring lncRNA Expression by Real-Time PCR.

Authors:  Sonam Dhamija; Manoj B Menon
Journal:  Methods Mol Biol       Date:  2021

9.  REPAIRx, a specific yet highly efficient programmable A > I RNA base editor.

Authors:  Yajing Liu; Shaoshuai Mao; Shisheng Huang; Yongqin Li; Yuxin Chen; Minghui Di; Xinxin Huang; Junjun Lv; Xinxin Wang; Jianyang Ge; Shengxi Shen; Xiaoming Zhang; Dahai Liu; Xingxu Huang; Tian Chi
Journal:  EMBO J       Date:  2020-10-15       Impact factor: 11.598

10.  A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival.

Authors:  Karen Yap; Svetlana Mukhina; Gen Zhang; Jason S C Tan; Hong Sheng Ong; Eugene V Makeyev
Journal:  Mol Cell       Date:  2018-10-11       Impact factor: 17.970

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