| Literature DB >> 30248895 |
Frida Danielsson1, McKenzie Kirsten Peterson2, Helena Caldeira Araújo3, Franziska Lautenschläger4, Annica Karin Britt Gad5,6.
Abstract
Vimentin is a protein that has been linked to a large variety of pathophysiological conditions, including cataracts, Crohn's disease, rheumatoid arthritis, HIV and cancer. Vimentin has also been shown to regulate a wide spectrum of basic cellular functions. In cells, vimentin assembles into a network of filaments that spans the cytoplasm. It can also be found in smaller, non-filamentous forms that can localise both within cells and within the extracellular microenvironment. The vimentin structure can be altered by subunit exchange, cleavage into different sizes, re-annealing, post-translational modifications and interacting proteins. Together with the observation that different domains of vimentin might have evolved under different selection pressures that defined distinct biological functions for different parts of the protein, the many diverse variants of vimentin might be the cause of its functional diversity. A number of review articles have focussed on the biology and medical aspects of intermediate filament proteins without particular commitment to vimentin, and other reviews have focussed on intermediate filaments in an in vitro context. In contrast, the present review focusses almost exclusively on vimentin, and covers both ex vivo and in vivo data from tissue culture and from living organisms, including a summary of the many phenotypes of vimentin knockout animals. Our aim is to provide a comprehensive overview of the current understanding of the many diverse aspects of vimentin, from biochemical, mechanical, cellular, systems biology and medical perspectives.Entities:
Keywords: biomechanics; cancer and metastasis; cell mechanical stiffness or elasticity; cellular contractility; cell‒extracellular matrix adhesions; clinical biomarkers; drug target; epithelial‒mesenchymal transition; extracellular vimentin; intermediate filaments; tissue regeneration; vimentin
Year: 2018 PMID: 30248895 PMCID: PMC6210396 DOI: 10.3390/cells7100147
Source DB: PubMed Journal: Cells ISSN: 2073-4409 Impact factor: 6.600
Figure 1(A) The amino acid sequence of vimentin rod domain, with the amino acid position in the sequence indicated above the one-letter code. Heptad (not coloured) and hendecad (violet) motifs are indicated. Residues predicted to be buried in the hydrophobic core are highlighted in yellow. The coil 1A, linker 1, coil 1B, coil 2 structures are indicated with pink, red, violet, and blue, respectively. (B) Schematic structure of a vimentin dimer (top) and tetramer (bottom) showing the antiparallel association of two coiled coil dimers, with the structures indicated with colours as in A. Each dimer is formed by a pair of parallel chains. The figure is adapted from Figure 4 in Chernyatina, PNAS 2015 [36], and based on data by Chernyatina, PNAS 2012 [37].
Figure 2Example of tissue groups in which vimentin protein has been identified in low, medium or high levels. Gender-neutral and gender-specific tissue groups are indicated by blue or white squares, respectively.
Critical in vivo studies highlighting the effects of vimentin knockout in murine animal models, classified according to the cellular effect.
| Resulting Phenotype | Reference |
|---|---|
| Bornheim, Müller et al., 2008 [ | |
| Peuhu, Virtakoivu et al., 2017 [ | |
| Colucci-Guyon, Giménez et al., 1999 [ | |
| Geerts et al., 2001 [ | |
| Nieminen, Henttinen et al., 2006 [ | |
| Langlois, Belozertseva et al. 2017 [ | |
| Brown, Hallam et al., 2001 [ | |
| Schiffers, Henrion et al., 2000 [ | |
| Antfolk, Sjöqvist et al., 2017 [ | |
| Terzi, Henrion et al., 1997 [ | |
| Mor-Vaknin, Legendre 2013 [ | |
| Cheng, Shen et al., 2016 [ | |
| Eckes, Colucci-Guyon et al., 2000 [ | |
| Huang, Chi et al., 2016 [ | |
| Jiang, Slinn et al., 2012 [ | |
| Colucci-Guyon, Portier et al., 1994 [ | |
| Moisan, Chiasson et al., 2007 [ | |
| Park, Xiang et al., 2010 [ |
Publications measuring mechanical properties of cells depending on vimentin, classified according to the measurement method. Cells were adhered to an underlying substrate if not described otherwise. An asterisk indicates studies showing that vimentin levels correlate with stiffness.
| Methods | Part of Cell Tested | Cell Type | Vimentin Interfering Method | Result of Vimentin Perturbation | Reference |
|---|---|---|---|---|---|
| Magnetic bead rheology | Cell cortex | Fibroblasts |
| Eckes et al., 1998 [ | |
| Magnetic bead rheology | Cell cortex | Fibroblasts |
| Wang and Stamenovic 2000 [ | |
| Magnetic bead rheology | Cell cortex | Fibroblasts |
| Guo, Ehrlicher et al., 2013 [ | |
| Optical tweezer | Cytoplasm | Fibroblasts |
| Guo, Ehrlicher et al., 2013 [ | |
| Shear Flow | Cell surface | Endothelial cells | No extra vimentin |
| Helmke, Goldman et al., 2000 [ |
| AFM | Cell cortex | Immortalised fibroblasts | Oncogenes increasing total level and soluble fraction of vimentin |
| Rathje, Nordgren et al., 2014 [ |
| AFM | Perinuclear region (cytoplasm and cortex) | Fibroblasts | Non-filament-forming desmin mutation; vimentin collapse |
| Plodinec, Loparic et al., 2011 [ |
| AFM | Cortex above nucleus | Breast cancer cells | SiRNA, ShRNA |
| Liu, Lin et al., 2015 [ |
| Micropost arrays | Whole cell | Breast cancer cells | SiRNA, ShRNA |
| Liu, Lin et al., 2015 [ |
| Magnetic bead rheology (rotational force) + substrate stretching | Cell cortex | Chondrocytes | Acrylamide |
| Chen, Yin et al., 2016 [ |
| Traction force microscopy | Whole cell | Chondrocytes | Acrylamide |
| Chen, Yin et al., 2016 [ |
| Image analysis | Nuclear stiffness | Human mesenchymal stem cells |
| Keeling, Flores et al., 2017 [ | |
| Thin film deformation with finite element modelling | Whole cell | Fibroblasts |
| van Loosdregt et al., 2018 [ | |
| Agarose-embedded cells (<20% strain) | Whole cell deformation | Mesenchymal stem cells | ShRNA |
| Sharma, Bolten et al., 2017 [ |
| Alginate-embedded cells (<20% strain) | Whole cell deformation | Primary human chondrocytes | Acrylamide |
| Haudenschild, Chen et al., 2011 [ |
| Optical stretcher on suspended cells | Whole cell deformation | Natural Killer cells | Withaferin-A |
| Gladilin, Gonzalez et al., 2014 [ |
Figure 3Examples of how the vimentin protein control cells, on a molecular (top), cellular (middle) and extracellular (bottom) level.
Figure 4Diseases linked to defective functions of the vimentin protein. Neoplasms are shown in blue boxes, other pathologies in grey boxes.