Literature DB >> 19117942

Head and rod 1 interactions in vimentin: identification of contact sites, structure, and changes with phosphorylation using site-directed spin labeling and electron paramagnetic resonance.

Atya Aziz1, John F Hess, Madhu S Budamagunta, Paul G FitzGerald, John C Voss.   

Abstract

We have used site-directed spin labeling (SDSL) and electron paramagnetic resonance (EPR) to identify residues 17 and 137 as sites of interaction between the head domain and rod domain 1A of the intermediate filament protein vimentin. This interaction was maximal when compared with the spin labels placed at up- and downstream positions in both head and rod regions, indicating that residues 17 and 137 were the closest point of interaction in this region. SDSL EPR characterization of residues 120-145, which includes the site of head contact with rod 1A, reveals that this region exhibits the heptad repeat pattern indicative of alpha-helical coiled-coil structure, but that this heptad repeat pattern begins to decay near residue 139, suggesting a transition out of coiled-coil structure. By monitoring the spectra of spin labels placed at the 17 and 137 residues during in vitro assembly, we show that 17-137 interaction occurs early in the assembly process. We also explored the effect of phosphorylation on the 17-137 interaction and found that phosphorylation-induced changes affected the head-head interaction (17-17) in the dimer, without significantly influencing the rod-rod (137-137) and head-rod (17-137) interactions in the dimer. These data provide the first direct evidence for, and location of, head-rod interactions in assembled intermediate filaments, as well as direct evidence of coiled-coil structure in rod 1A. Finally, the data identify changes in the structure in this region following in vitro phosphorylation.

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Year:  2008        PMID: 19117942      PMCID: PMC2652308          DOI: 10.1074/jbc.M809029200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  50 in total

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2.  Characterization of the linker 2 region in human vimentin using site-directed spin labeling and electron paramagnetic resonance.

Authors:  John F Hess; Madhu S Budamagunta; Rebecca L Shipman; Paul G FitzGerald; John C Voss
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Review 3.  Intermediate filaments: from cell architecture to nanomechanics.

Authors:  Harald Herrmann; Harald Bär; Laurent Kreplak; Sergei V Strelkov; Ueli Aebi
Journal:  Nat Rev Mol Cell Biol       Date:  2007-07       Impact factor: 94.444

Review 4.  Towards a molecular description of intermediate filament structure and assembly.

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Journal:  Exp Cell Res       Date:  2007-04-12       Impact factor: 3.905

Review 5.  Intermediate filaments: a historical perspective.

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Journal:  Exp Cell Res       Date:  2007-04-11       Impact factor: 3.905

6.  Monitoring intermediate filament assembly by small-angle x-ray scattering reveals the molecular architecture of assembly intermediates.

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7.  Molecular interactions in intermediate-sized filaments revealed by chemical cross-linking. Heteropolymers of vimentin and glial filament protein in cultured human glioma cells.

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8.  Structure and assembly properties of the intermediate filament protein vimentin: the role of its head, rod and tail domains.

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9.  Characterization of structural changes in vimentin bearing an epidermolysis bullosa simplex-like mutation using site-directed spin labeling and electron paramagnetic resonance.

Authors:  John F Hess; Madhu S Budamagunta; Paul G FitzGerald; John C Voss
Journal:  J Biol Chem       Date:  2004-11-18       Impact factor: 5.157

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  13 in total

1.  The structure of vimentin linker 1 and rod 1B domains characterized by site-directed spin-labeling electron paramagnetic resonance (SDSL-EPR) and X-ray crystallography.

Authors:  Atya Aziz; John F Hess; Madhu S Budamagunta; John C Voss; Alexandre P Kuzin; Yuanpeng J Huang; Rong Xiao; Gaetano T Montelione; Paul G FitzGerald; John F Hunt
Journal:  J Biol Chem       Date:  2012-06-26       Impact factor: 5.157

2.  Site-directed spin labeling and electron paramagnetic resonance determination of vimentin head domain structure.

Authors:  Atya Aziz; John F Hess; Madhu S Budamagunta; John C Voss; Paul G FitzGerald
Journal:  J Biol Chem       Date:  2010-03-15       Impact factor: 5.157

3.  Atomic structure of the vimentin central α-helical domain and its implications for intermediate filament assembly.

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4.  Electron paramagnetic resonance analysis of the vimentin tail domain reveals points of order in a largely disordered region and conformational adaptation upon filament assembly.

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Journal:  Protein Sci       Date:  2013-01       Impact factor: 6.725

Review 5.  Molecular insights into cardiomyopathies associated with desmin (DES) mutations.

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6.  Completion of the Vimentin Rod Domain Structure Using Experimental Restraints: A New Tool for Exploring Intermediate Filament Assembly and Mutations.

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Journal:  Structure       Date:  2019-08-08       Impact factor: 5.006

7.  Impact of N-Terminal Tags on De Novo Vimentin Intermediate Filament Assembly.

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8.  Vimentin Tail Segments Are Differentially Exposed at Distinct Cellular Locations and in Response to Stress.

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Journal:  J Immunol       Date:  2013-07-26       Impact factor: 5.422

10.  RAB7A Regulates Vimentin Phosphorylation through AKT and PAK.

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Journal:  Cancers (Basel)       Date:  2021-05-06       Impact factor: 6.639

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