Literature DB >> 25973959

Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Leonid S Brown1, Vladimir Ladizhansky1.   

Abstract

Membrane proteins play many critical roles in cells, mediating flow of material and information across cell membranes. They have evolved to perform these functions in the environment of a cell membrane, whose physicochemical properties are often different from those of common cell membrane mimetics used for structure determination. As a result, membrane proteins are difficult to study by traditional methods of structural biology, and they are significantly underrepresented in the protein structure databank. Solid-state Nuclear Magnetic Resonance (SSNMR) has long been considered as an attractive alternative because it allows for studies of membrane proteins in both native-like membranes composed of synthetic lipids and in cell membranes. Over the past decade, SSNMR has been rapidly developing into a major structural method, and a growing number of membrane protein structures obtained by this technique highlights its potential. Here we discuss membrane protein sample requirements, review recent progress in SSNMR methodologies, and describe recent advances in characterizing membrane proteins in the environment of a cellular membrane.
© 2015 The Protein Society.

Entities:  

Keywords:  cell membrane; lipid bilayer; membrane protein; protein structure; solid-state NMR

Mesh:

Substances:

Year:  2015        PMID: 25973959      PMCID: PMC4570529          DOI: 10.1002/pro.2700

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  129 in total

1.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

2.  Characterization of membrane proteins in isolated native cellular membranes by dynamic nuclear polarization solid-state NMR spectroscopy without purification and reconstitution.

Authors:  Tomas Jacso; W Trent Franks; Honor Rose; Uwe Fink; Jana Broecker; Sandro Keller; Hartmut Oschkinat; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-23       Impact factor: 15.336

3.  Cellular solid-state nuclear magnetic resonance spectroscopy.

Authors:  Marie Renault; Ria Tommassen-van Boxtel; Martine P Bos; Jan Andries Post; Jan Tommassen; Marc Baldus
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

4.  Interactions of interleukin-8 with the human chemokine receptor CXCR1 in phospholipid bilayers by NMR spectroscopy.

Authors:  Sang Ho Park; Fabio Casagrande; Leah Cho; Lauren Albrecht; Stanley J Opella
Journal:  J Mol Biol       Date:  2011-10-12       Impact factor: 5.469

5.  Isolation of Escherichia coli inner membranes by metal affinity two-phase partitioning.

Authors:  Henrik Everberg; Joanne Clough; Peter Henderson; Bengt Jergil; Folke Tjerneld; Irene Barinaga-Rementeria Ramírez
Journal:  J Chromatogr A       Date:  2006-05-02       Impact factor: 4.759

6.  Assignment strategies for large proteins by magic-angle spinning NMR: the 21-kDa disulfide-bond-forming enzyme DsbA.

Authors:  Lindsay J Sperling; Deborah A Berthold; Terry L Sasser; Victoria Jeisy-Scott; Chad M Rienstra
Journal:  J Mol Biol       Date:  2010-04-13       Impact factor: 5.469

7.  Proton-detected solid-state NMR reveals intramembrane polar networks in a seven-helical transmembrane protein proteorhodopsin.

Authors:  Meaghan E Ward; Lichi Shi; Evelyn Lake; Sridevi Krishnamurthy; Howard Hutchins; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

8.  A general Monte Carlo/simulated annealing algorithm for resonance assignment in NMR of uniformly labeled biopolymers.

Authors:  Kan-Nian Hu; Wei Qiang; Robert Tycko
Journal:  J Biomol NMR       Date:  2011-06-28       Impact factor: 2.835

9.  Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching.

Authors:  Marcelo J Berardi; William M Shih; Stephen C Harrison; James J Chou
Journal:  Nature       Date:  2011-07-24       Impact factor: 49.962

10.  Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Authors:  Ulrich H N Dürr; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2007-05-09       Impact factor: 15.419

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  20 in total

1.  Bioinspired, Size-Tunable Self-Assembly of Polymer-Lipid Bilayer Nanodiscs.

Authors:  Thirupathi Ravula; Sudheer Kumar Ramadugu; Giacomo Di Mauro; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-10       Impact factor: 15.336

Review 2.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

Review 3.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

Review 4.  Current strategies for protein production and purification enabling membrane protein structural biology.

Authors:  Aditya Pandey; Kyungsoo Shin; Robin E Patterson; Xiang-Qin Liu; Jan K Rainey
Journal:  Biochem Cell Biol       Date:  2016-01-20       Impact factor: 3.626

5.  Sparse (13)C labelling for solid-state NMR studies of P. pastoris expressed eukaryotic seven-transmembrane proteins.

Authors:  Jing Liu; Chang Liu; Ying Fan; Rachel A Munro; Vladimir Ladizhansky; Leonid S Brown; Shenlin Wang
Journal:  J Biomol NMR       Date:  2016-04-27       Impact factor: 2.835

Review 6.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

7.  Formation of pH-Resistant Monodispersed Polymer-Lipid Nanodiscs.

Authors:  Thirupathi Ravula; Nathaniel Z Hardin; Sudheer Kumar Ramadugu; Sarah J Cox; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2018-01-08       Impact factor: 15.336

Review 8.  Applications of NMR to membrane proteins.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

9.  Cell-free expression, purification, and membrane reconstitution for NMR studies of the nonstructural protein 4B from hepatitis C virus.

Authors:  Marie-Laure Fogeron; Vlastimil Jirasko; Susanne Penzel; David Paul; Roland Montserret; Clément Danis; Denis Lacabanne; Aurélie Badillo; Jérôme Gouttenoire; Darius Moradpour; Ralf Bartenschlager; François Penin; Beat H Meier; Anja Böckmann
Journal:  J Biomol NMR       Date:  2016-05-27       Impact factor: 2.835

10.  Gd3+-chelated lipid accelerates solid-state NMR spectroscopy of seven-transmembrane proteins.

Authors:  Chang Liu; Jing Liu; Xiaojun Xu; ShengQi Xiang; Shenlin Wang
Journal:  J Biomol NMR       Date:  2017-05-30       Impact factor: 2.835

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