Literature DB >> 28093096

Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Caitlin M Quinn1, Tatyana Polenova1.   

Abstract

In recent years, exciting developments in instrument technology and experimental methodology have advanced the field of magic-angle spinning (MAS) nuclear magnetic resonance (NMR) to new heights. Contemporary MAS NMR yields atomic-level insights into structure and dynamics of an astounding range of biological systems, many of which cannot be studied by other methods. With the advent of fast MAS, proton detection, and novel pulse sequences, large supramolecular assemblies, such as cytoskeletal proteins and intact viruses, are now accessible for detailed analysis. In this review, we will discuss the current MAS NMR methodologies that enable characterization of complex biomolecular systems and will present examples of applications to several classes of assemblies comprising bacterial and mammalian cytoskeleton as well as human immunodeficiency virus 1 and bacteriophage viruses. The body of work reviewed herein is representative of the recent advancements in the field, with respect to the complexity of the systems studied, the quality of the data, and the significance to the biology.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28093096      PMCID: PMC5483179          DOI: 10.1017/S0033583516000159

Source DB:  PubMed          Journal:  Q Rev Biophys        ISSN: 0033-5835            Impact factor:   5.318


  315 in total

1.  Determination of multiple ***φ***-torsion angles in proteins by selective and extensive (13)C labeling and two-dimensional solid-state NMR.

Authors:  M Hong
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Magic angle spinning solid-state NMR spectroscopy for structural studies of protein interfaces. resonance assignments of differentially enriched Escherichia coli thioredoxin reassembled by fragment complementation.

Authors:  Dabeiba Marulanda; Maria Luisa Tasayco; Ann McDermott; Marcela Cataldi; Vilma Arriaran; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

Review 3.  To kill or be killed: how viruses interact with the cell death machinery.

Authors:  V Kaminskyy; B Zhivotovsky
Journal:  J Intern Med       Date:  2010-05       Impact factor: 8.989

4.  The interdomain linker region of HIV-1 capsid protein is a critical determinant of proper core assembly and stability.

Authors:  Jiyang Jiang; Sherimay D Ablan; Suchitra Derebail; Kamil Hercík; Ferri Soheilian; James A Thomas; Shixing Tang; Indira Hewlett; Kunio Nagashima; Robert J Gorelick; Eric O Freed; Judith G Levin
Journal:  Virology       Date:  2011-10-26       Impact factor: 3.616

5.  Binding of the human immunodeficiency virus type 1 Gag polyprotein to cyclophilin A is mediated by the central region of capsid and requires Gag dimerization.

Authors:  J Colgan; H E Yuan; E K Franke; J Luban
Journal:  J Virol       Date:  1996-07       Impact factor: 5.103

6.  The p150Glued component of the dynactin complex binds to both microtubules and the actin-related protein centractin (Arp-1).

Authors:  C M Waterman-Storer; S Karki; E L Holzbaur
Journal:  Proc Natl Acad Sci U S A       Date:  1995-02-28       Impact factor: 11.205

7.  Dynamics of reassembled thioredoxin studied by magic angle spinning NMR: snapshots from different time scales.

Authors:  Jun Yang; Maria Luisa Tasayco; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

8.  Assignment of congested NMR spectra: carbonyl backbone enrichment via the Entner-Doudoroff pathway.

Authors:  Amir Goldbourt; Loren A Day; Ann E McDermott
Journal:  J Magn Reson       Date:  2007-08-17       Impact factor: 2.229

9.  Structure of full-length HIV-1 CA: a model for the mature capsid lattice.

Authors:  Barbie K Ganser-Pornillos; Anchi Cheng; Mark Yeager
Journal:  Cell       Date:  2007-10-05       Impact factor: 41.582

10.  Site-resolved measurement of microsecond-to-millisecond conformational-exchange processes in proteins by solid-state NMR spectroscopy.

Authors:  Martin Tollinger; Astrid C Sivertsen; Beat H Meier; Matthias Ernst; Paul Schanda
Journal:  J Am Chem Soc       Date:  2012-08-28       Impact factor: 15.419

View more
  25 in total

1.  Peptide bond conformation in peptides and proteins probed by dipolar coupling-chemical shift tensor correlation solid-state NMR.

Authors:  Dwaipayan Mukhopadhyay; Chitrak Gupta; Theint Theint; Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2018-10-30       Impact factor: 2.229

2.  Rapid Quantitative Measurements of Paramagnetic Relaxation Enhancements in Cu(II)-Tagged Proteins by Proton-Detected Solid-State NMR Spectroscopy.

Authors:  Dwaipayan Mukhopadhyay; Philippe S Nadaud; Matthew D Shannon; Christopher P Jaroniec
Journal:  J Phys Chem Lett       Date:  2017-11-20       Impact factor: 6.475

Review 3.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

4.  Dynamic Nuclear Polarization Magic-Angle Spinning Nuclear Magnetic Resonance Combined with Molecular Dynamics Simulations Permits Detection of Order and Disorder in Viral Assemblies.

Authors:  Rupal Gupta; Huilan Zhang; Manman Lu; Guangjin Hou; Marc Caporini; Melanie Rosay; Werner Maas; Jochem Struppe; Jinwoo Ahn; In-Ja L Byeon; Hartmut Oschkinat; Kristaps Jaudzems; Emeline Barbet-Massin; Lyndon Emsley; Guido Pintacuda; Anne Lesage; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2019-06-11       Impact factor: 2.991

Review 5.  Isotope labeling for studying RNA by solid-state NMR spectroscopy.

Authors:  Alexander Marchanka; Christoph Kreutz; Teresa Carlomagno
Journal:  J Biomol NMR       Date:  2018-04-12       Impact factor: 2.835

6.  Exact distance measurements for structure and dynamics in solid proteins by fast-magic-angle-spinning NMR.

Authors:  Kristof Grohe; Evgeny Nimerovsky; Himanshu Singh; Suresh K Vasa; Benedikt Söldner; Beat Vögeli; Chad M Rienstra; Rasmus Linser
Journal:  Chem Commun (Camb)       Date:  2019-06-14       Impact factor: 6.222

7.  A Protofilament-Protofilament Interface in the Structure of Mouse α-Synuclein Fibrils.

Authors:  Guohua Lv; Ashutosh Kumar; Yun Huang; David Eliezer
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

8.  Measurement of Accurate Interfluorine Distances in Crystalline Organic Solids: A High-Frequency Magic Angle Spinning NMR Approach.

Authors:  Matthew Fritz; Jodi Kraus; Caitlin M Quinn; Glenn P A Yap; Jochem Struppe; Ivan V Sergeyev; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2019-12-10       Impact factor: 2.991

Review 9.  Hidden motions and motion-induced invisibility: Dynamics-based spectral editing in solid-state NMR.

Authors:  Irina Matlahov; Patrick C A van der Wel
Journal:  Methods       Date:  2018-04-24       Impact factor: 3.608

Review 10.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2018
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.