Literature DB >> 27233794

Cell-free expression, purification, and membrane reconstitution for NMR studies of the nonstructural protein 4B from hepatitis C virus.

Marie-Laure Fogeron1, Vlastimil Jirasko2,3,4, Susanne Penzel2, David Paul3,4, Roland Montserret1, Clément Danis1, Denis Lacabanne1, Aurélie Badillo1,5, Jérôme Gouttenoire6, Darius Moradpour6, Ralf Bartenschlager3,4, François Penin1, Beat H Meier7, Anja Böckmann8.   

Abstract

We describe the expression of the hepatitis C virus nonstructural protein 4B (NS4B), which is an integral membrane protein, in a wheat germ cell-free system, the subsequent purification and characterization of NS4B and its insertion into proteoliposomes in amounts sufficient for multidimensional solid-state NMR spectroscopy. First spectra of the isotopically [(2)H,(13)C,(15)N]-labeled protein are shown to yield narrow (13)C resonance lines and a proper, predominantly α-helical fold. Clean residue-selective leucine, isoleucine and threonine-labeling is demonstrated. These results evidence the suitability of the wheat germ-produced integral membrane protein NS4B for solid-state NMR. Still, the proton linewidth under fast magic angle spinning is broader than expected for a perfect sample and possible causes are discussed.

Entities:  

Keywords:  Cell-free protein expression; Integral membrane protein; Isotope labeling; Lipid reconstitution; NS4B; Solid-state NMR

Mesh:

Substances:

Year:  2016        PMID: 27233794     DOI: 10.1007/s10858-016-0040-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  52 in total

1.  Assembling a Correctly Folded and Functional Heptahelical Membrane Protein by Protein Trans-splicing.

Authors:  Michaela Mehler; Carl Elias Eckert; Alena Busche; Jennifer Kulhei; Jonas Michaelis; Johanna Becker-Baldus; Josef Wachtveitl; Volker Dötsch; Clemens Glaubitz
Journal:  J Biol Chem       Date:  2015-09-24       Impact factor: 5.157

Review 2.  Cell-free expression systems for eukaryotic protein production.

Authors:  Yaeta Endo; Tatsuya Sawasaki
Journal:  Curr Opin Biotechnol       Date:  2006-07-07       Impact factor: 9.740

3.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

4.  Practical cell-free protein synthesis system using purified wheat embryos.

Authors:  Kazuyuki Takai; Tatsuya Sawasaki; Yaeta Endo
Journal:  Nat Protoc       Date:  2010-01-21       Impact factor: 13.491

5.  A proton-detected 4D solid-state NMR experiment for protein structure determination.

Authors:  Matthias Huber; Sebastian Hiller; Paul Schanda; Matthias Ernst; Anja Böckmann; René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2011-02-15       Impact factor: 3.102

6.  The ABC exporter MsbA probed by solid state NMR – challenges and opportunities.

Authors:  Hundeep Kaur; Andrea Lakatos; Roberta Spadaccini; Ramona Vogel; Christian Hoffmann; Johanna Becker-Baldus; Olivier Ouari; Paul Tordo; Hassane Mchaourab; Clemens Glaubitz
Journal:  Biol Chem       Date:  2015-09       Impact factor: 3.915

7.  De novo 3D structure determination from sub-milligram protein samples by solid-state 100 kHz MAS NMR spectroscopy.

Authors:  Vipin Agarwal; Susanne Penzel; Kathrin Szekely; Riccardo Cadalbert; Emilie Testori; Andres Oss; Jaan Past; Ago Samoson; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2014-09-15       Impact factor: 15.336

8.  An amphipathic alpha-helix at the C terminus of hepatitis C virus nonstructural protein 4B mediates membrane association.

Authors:  Jérôme Gouttenoire; Roland Montserret; Audrey Kennel; François Penin; Darius Moradpour
Journal:  J Virol       Date:  2009-08-19       Impact factor: 5.103

Review 9.  Hepatitis C virus proteins: from structure to function.

Authors:  Darius Moradpour; François Penin
Journal:  Curr Top Microbiol Immunol       Date:  2013       Impact factor: 4.291

10.  Aminoterminal amphipathic α-helix AH1 of hepatitis C virus nonstructural protein 4B possesses a dual role in RNA replication and virus production.

Authors:  Jérôme Gouttenoire; Roland Montserret; David Paul; Rosa Castillo; Simon Meister; Ralf Bartenschlager; François Penin; Darius Moradpour
Journal:  PLoS Pathog       Date:  2014-11-13       Impact factor: 6.823

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  9 in total

1.  Glycine Zipper Motifs in Hepatitis C Virus Nonstructural Protein 4B Are Required for the Establishment of Viral Replication Organelles.

Authors:  David Paul; Vanesa Madan; Omar Ramirez; Maja Bencun; Ina Karen Stoeck; Vlastimil Jirasko; Ralf Bartenschlager
Journal:  J Virol       Date:  2018-01-30       Impact factor: 5.103

2.  Direct amide 15N to 13C transfers for solid-state assignment experiments in deuterated proteins.

Authors:  Alons Lends; Francesco Ravotti; Giorgia Zandomeneghi; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2018-09-11       Impact factor: 2.835

Review 3.  Virus Structures and Dynamics by Magic-Angle Spinning NMR.

Authors:  Gal Porat-Dahlerbruch; Amir Goldbourt; Tatyana Polenova
Journal:  Annu Rev Virol       Date:  2021-09-29       Impact factor: 10.431

4.  Proton-Detected Solid-State NMR of the Cell-Free Synthesized α-Helical Transmembrane Protein NS4B from Hepatitis C Virus.

Authors:  Vlastimil Jirasko; Nils-Alexander Lakomek; Susanne Penzel; Marie-Laure Fogeron; Ralf Bartenschlager; Beat H Meier; Anja Böckmann
Journal:  Chembiochem       Date:  2020-02-20       Impact factor: 3.164

5.  Phosphorylation and Alternative Translation on Wheat Germ Cell-Free Protein Synthesis of the DHBV Large Envelope Protein.

Authors:  Guillaume David; Marie-Laure Fogeron; Roland Montserret; Lauriane Lecoq; Adeline Page; Frédéric Delolme; Michael Nassal; Anja Böckmann
Journal:  Front Mol Biosci       Date:  2019-12-03

Review 6.  Easy Synthesis of Complex Biomolecular Assemblies: Wheat Germ Cell-Free Protein Expression in Structural Biology.

Authors:  Marie-Laure Fogeron; Lauriane Lecoq; Laura Cole; Matthias Harbers; Anja Böckmann
Journal:  Front Mol Biosci       Date:  2021-03-25

7.  Phosphorylation of the Hepatitis B Virus Large Envelope Protein.

Authors:  Marie-Laure Fogeron; Lauriane Lecoq; Laura Cole; Roland Montserret; Guillaume David; Adeline Page; Frédéric Delolme; Michael Nassal; Anja Böckmann
Journal:  Front Mol Biosci       Date:  2022-02-23

Review 8.  Solid-State NMR for Studying the Structure and Dynamics of Viral Assemblies.

Authors:  Lauriane Lecoq; Marie-Laure Fogeron; Beat H Meier; Michael Nassal; Anja Böckmann
Journal:  Viruses       Date:  2020-09-24       Impact factor: 5.048

9.  Large-Scale Recombinant Production of the SARS-CoV-2 Proteome for High-Throughput and Structural Biology Applications.

Authors:  Nadide Altincekic; Sophie Marianne Korn; Nusrat Shahin Qureshi; Marie Dujardin; Martí Ninot-Pedrosa; Rupert Abele; Marie Jose Abi Saad; Caterina Alfano; Fabio C L Almeida; Islam Alshamleh; Gisele Cardoso de Amorim; Thomas K Anderson; Cristiane D Anobom; Chelsea Anorma; Jasleen Kaur Bains; Adriaan Bax; Martin Blackledge; Julius Blechar; Anja Böckmann; Louis Brigandat; Anna Bula; Matthias Bütikofer; Aldo R Camacho-Zarco; Teresa Carlomagno; Icaro Putinhon Caruso; Betül Ceylan; Apirat Chaikuad; Feixia Chu; Laura Cole; Marquise G Crosby; Vanessa de Jesus; Karthikeyan Dhamotharan; Isabella C Felli; Jan Ferner; Yanick Fleischmann; Marie-Laure Fogeron; Nikolaos K Fourkiotis; Christin Fuks; Boris Fürtig; Angelo Gallo; Santosh L Gande; Juan Atilio Gerez; Dhiman Ghosh; Francisco Gomes-Neto; Oksana Gorbatyuk; Serafima Guseva; Carolin Hacker; Sabine Häfner; Bing Hao; Bruno Hargittay; K Henzler-Wildman; Jeffrey C Hoch; Katharina F Hohmann; Marie T Hutchison; Kristaps Jaudzems; Katarina Jović; Janina Kaderli; Gints Kalniņš; Iveta Kaņepe; Robert N Kirchdoerfer; John Kirkpatrick; Stefan Knapp; Robin Krishnathas; Felicitas Kutz; Susanne Zur Lage; Roderick Lambertz; Andras Lang; Douglas Laurents; Lauriane Lecoq; Verena Linhard; Frank Löhr; Anas Malki; Luiza Mamigonian Bessa; Rachel W Martin; Tobias Matzel; Damien Maurin; Seth W McNutt; Nathane Cunha Mebus-Antunes; Beat H Meier; Nathalie Meiser; Miguel Mompeán; Elisa Monaca; Roland Montserret; Laura Mariño Perez; Celine Moser; Claudia Muhle-Goll; Thais Cristtina Neves-Martins; Xiamonin Ni; Brenna Norton-Baker; Roberta Pierattelli; Letizia Pontoriero; Yulia Pustovalova; Oliver Ohlenschläger; Julien Orts; Andrea T Da Poian; Dennis J Pyper; Christian Richter; Roland Riek; Chad M Rienstra; Angus Robertson; Anderson S Pinheiro; Raffaele Sabbatella; Nicola Salvi; Krishna Saxena; Linda Schulte; Marco Schiavina; Harald Schwalbe; Mara Silber; Marcius da Silva Almeida; Marc A Sprague-Piercy; Georgios A Spyroulias; Sridhar Sreeramulu; Jan-Niklas Tants; Kaspars Tārs; Felix Torres; Sabrina Töws; Miguel Á Treviño; Sven Trucks; Aikaterini C Tsika; Krisztina Varga; Ying Wang; Marco E Weber; Julia E Weigand; Christoph Wiedemann; Julia Wirmer-Bartoschek; Maria Alexandra Wirtz Martin; Johannes Zehnder; Martin Hengesbach; Andreas Schlundt
Journal:  Front Mol Biosci       Date:  2021-05-10
  9 in total

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