Literature DB >> 30410121

GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Ichio Shimada1, Takumi Ueda1, Yutaka Kofuku1, Matthew T Eddy2,3,4, Kurt Wüthrich2,5.   

Abstract

The 826 G protein-coupled receptors (GPCRs) in the human proteome regulate key physiological processes and thus have long been attractive drug targets. With the crystal structures of more than 50 different human GPCRs determined over the past decade, an initial platform for structure-based rational design has been established for drugs that target GPCRs, which is currently being augmented with cryo-electron microscopy (cryo-EM) structures of higher-order GPCR complexes. Nuclear magnetic resonance (NMR) spectroscopy in solution is one of the key approaches for expanding this platform with dynamic features, which can be accessed at physiological temperature and with minimal modification of the wild-type GPCR covalent structures. Here, we review strategies for the use of advanced biochemistry and NMR techniques with GPCRs, survey projects in which crystal or cryo-EM structures have been complemented with NMR investigations and discuss the impact of this integrative approach on GPCR biology and drug discovery.

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Year:  2018        PMID: 30410121      PMCID: PMC6681916          DOI: 10.1038/nrd.2018.180

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  268 in total

1.  Agonist-induced conformational changes in the G-protein-coupling domain of the beta 2 adrenergic receptor.

Authors:  P Ghanouni; J J Steenhuis; D L Farrens; B K Kobilka
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-15       Impact factor: 11.205

Review 2.  Observing biological dynamics at atomic resolution using NMR.

Authors:  Anthony K Mittermaier; Lewis E Kay
Journal:  Trends Biochem Sci       Date:  2009-10-19       Impact factor: 13.807

3.  Competitive association binding kinetic assays: a new tool to detect two different binding orientations of a ligand to its target protein under distinct conditions?

Authors:  Hans-Joachim Wittmann; Andrea Strasser
Journal:  Naunyn Schmiedebergs Arch Pharmacol       Date:  2017-02-20       Impact factor: 3.000

4.  Purification of human beta2-adrenergic receptor expressed in methylotrophic yeast Pichia pastoris.

Authors:  Shuji Noguchi; Yoshinori Satow
Journal:  J Biochem       Date:  2006-10-18       Impact factor: 3.387

Review 5.  From G Protein-coupled Receptor Structure Resolution to Rational Drug Design.

Authors:  Ali Jazayeri; Joao M Dias; Fiona H Marshall
Journal:  J Biol Chem       Date:  2015-06-22       Impact factor: 5.157

6.  Covalently circularized nanodiscs for studying membrane proteins and viral entry.

Authors:  Mahmoud L Nasr; Diego Baptista; Mike Strauss; Zhen-Yu J Sun; Simina Grigoriu; Sonja Huser; Andreas Plückthun; Franz Hagn; Thomas Walz; James M Hogle; Gerhard Wagner
Journal:  Nat Methods       Date:  2016-11-21       Impact factor: 28.547

7.  Structure of the human histamine H1 receptor complex with doxepin.

Authors:  Tatsuro Shimamura; Mitsunori Shiroishi; Simone Weyand; Hirokazu Tsujimoto; Graeme Winter; Vsevolod Katritch; Ruben Abagyan; Vadim Cherezov; Wei Liu; Gye Won Han; Takuya Kobayashi; Raymond C Stevens; So Iwata
Journal:  Nature       Date:  2011-06-22       Impact factor: 49.962

Review 8.  The expanding repertoire of receptor activity modifying protein (RAMP) function.

Authors:  Klara R Klein; Brooke C Matson; Kathleen M Caron
Journal:  Crit Rev Biochem Mol Biol       Date:  2016-01-06       Impact factor: 8.250

9.  Conformational dynamics of a G-protein α subunit is tightly regulated by nucleotide binding.

Authors:  David Goricanec; Ralf Stehle; Pascal Egloff; Simina Grigoriu; Andreas Plückthun; Gerhard Wagner; Franz Hagn
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-13       Impact factor: 11.205

10.  G-protein-coupled receptor inactivation by an allosteric inverse-agonist antibody.

Authors:  Tomoya Hino; Takatoshi Arakawa; Hiroko Iwanari; Takami Yurugi-Kobayashi; Chiyo Ikeda-Suno; Yoshiko Nakada-Nakura; Osamu Kusano-Arai; Simone Weyand; Tatsuro Shimamura; Norimichi Nomura; Alexander D Cameron; Takuya Kobayashi; Takao Hamakubo; So Iwata; Takeshi Murata
Journal:  Nature       Date:  2012-01-29       Impact factor: 49.962

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  59 in total

Review 1.  Theoretical identification of thermostabilizing amino acid mutations for G-protein-coupled receptors.

Authors:  Takeshi Murata; Satoshi Yasuda; Tomohiko Hayashi; Masahiro Kinoshita
Journal:  Biophys Rev       Date:  2020-04-08

2.  Structural equilibrium underlying ligand-dependent activation of β2-adrenoreceptor.

Authors:  Shunsuke Imai; Tomoki Yokomizo; Yutaka Kofuku; Yutaro Shiraishi; Takumi Ueda; Ichio Shimada
Journal:  Nat Chem Biol       Date:  2020-01-20       Impact factor: 15.040

3.  Conformational equilibrium defines the variable induction of the multidrug-binding transcriptional repressor QacR.

Authors:  Koh Takeuchi; Misaki Imai; Ichio Shimada
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-16       Impact factor: 11.205

4.  A2A Adenosine Receptor Partial Agonism Related to Structural Rearrangements in an Activation Microswitch.

Authors:  Matthew T Eddy; Bryan T Martin; Kurt Wüthrich
Journal:  Structure       Date:  2020-11-24       Impact factor: 5.006

Review 5.  Targeting lipid GPCRs to treat type 2 diabetes mellitus - progress and challenges.

Authors:  Julien Ghislain; Vincent Poitout
Journal:  Nat Rev Endocrinol       Date:  2021-01-25       Impact factor: 43.330

6.  Probing the correlation between ligand efficacy and conformational diversity at the α1A-adrenoreceptor reveals allosteric coupling of its microswitches.

Authors:  Feng-Jie Wu; Lisa M Williams; Alaa Abdul-Ridha; Avanka Gunatilaka; Tasneem M Vaid; Martina Kocan; Alice R Whitehead; Michael D W Griffin; Ross A D Bathgate; Daniel J Scott; Paul R Gooley
Journal:  J Biol Chem       Date:  2020-04-17       Impact factor: 5.157

Review 7.  Structural biology of human GPCR drugs and endogenous ligands - insights from NMR spectroscopy.

Authors:  Guillaume Ferré; Matthew T Eddy
Journal:  Methods       Date:  2020-09-08       Impact factor: 3.608

Review 8.  Molecular Basis of Opioid Action: From Structures to New Leads.

Authors:  Aashish Manglik
Journal:  Biol Psychiatry       Date:  2019-09-12       Impact factor: 13.382

Review 9.  Nature-Derived Peptides: A Growing Niche for GPCR Ligand Discovery.

Authors:  Edin Muratspahić; Michael Freissmuth; Christian W Gruber
Journal:  Trends Pharmacol Sci       Date:  2019-04-05       Impact factor: 14.819

10.  Cholesterol in GPCR Structures: Prevalence and Relevance.

Authors:  Parijat Sarkar; Amitabha Chattopadhyay
Journal:  J Membr Biol       Date:  2021-08-07       Impact factor: 1.843

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