Literature DB >> 17488074

Solid-state NMR reveals structural and dynamical properties of a membrane-anchored electron-carrier protein, cytochrome b5.

Ulrich H N Dürr1, Kazutoshi Yamamoto, Sang-Choul Im, Lucy Waskell, Ayyalusamy Ramamoorthy.   

Abstract

Cytochrome b5 (cyt b5) is a membrane-anchored electron-carrier protein containing a heme in its soluble domain. It enhances the enzymatic turnover of selected members of the cytochrome P450 superfamily of catabolic enzymes, localized in the endoplasmic reticulum of liver cells. Remarkably, its alpha-helical membrane-anchoring domain is indispensable for the cyt b5/cyt P450 interaction. Here, we present the first solid-state NMR studies on holo-cyt b5 in a membrane environment, namely, macroscopically oriented DMPC:DHPC bicelles. We have presented approaches to selectively investigate different domains of the protein using spectral editing NMR techniques that utilize the unique motional properties of each domain. Two-dimensional 1H-15N HIMSELF spectra showed PISA-wheel patterns reporting on the structure and dynamics of the membrane anchor of the protein.

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Year:  2007        PMID: 17488074      PMCID: PMC2564813          DOI: 10.1021/ja069028m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

Review 1.  The hydrogen exchange core and protein folding.

Authors:  R Li; C Woodward
Journal:  Protein Sci       Date:  1999-08       Impact factor: 6.725

2.  High-level expression in Escherichia coli and purification of the membrane-bound form of cytochrome b(5).

Authors:  S B Mulrooney; L Waskell
Journal:  Protein Expr Purif       Date:  2000-06       Impact factor: 1.650

Review 3.  Structure and chemistry of cytochrome P450.

Authors:  Ilia G Denisov; Thomas M Makris; Stephen G Sligar; Ilme Schlichting
Journal:  Chem Rev       Date:  2005-06       Impact factor: 60.622

4.  Changes in ADC caused by tensile loading of rabbit achilles tendon: evidence for water transport.

Authors:  S Han; S J Gemmell; K G Helmer; P Grigg; J W Wellen; A H Hoffman; C H Sotak
Journal:  J Magn Reson       Date:  2000-06       Impact factor: 2.229

Review 5.  Current applications of bicelles in NMR studies of membrane-associated amphiphiles and proteins.

Authors:  R Scott Prosser; Ferenc Evanics; Julianne L Kitevski; M Sameer Al-Abdul-Wahid
Journal:  Biochemistry       Date:  2006-07-18       Impact factor: 3.162

6.  The solution structure of bovine ferricytochrome b5 determined using heteronuclear NMR methods.

Authors:  F W Muskett; G P Kelly; D Whitford
Journal:  J Mol Biol       Date:  1996-04-26       Impact factor: 5.469

7.  Sequence-specific 1H and 15N resonance assignments for both equilibrium forms of the soluble heme binding domain of rat ferrocytochrome b5.

Authors:  R D Guiles; V J Basus; I D Kuntz; L Waskell
Journal:  Biochemistry       Date:  1992-11-24       Impact factor: 3.162

8.  The role of the length and sequence of the linker domain of cytochrome b5 in stimulating cytochrome P450 2B4 catalysis.

Authors:  Thomas A Clarke; Sang-Choul Im; Anil Bidwai; Lucy Waskell
Journal:  J Biol Chem       Date:  2004-06-12       Impact factor: 5.157

9.  Cytochrome b5, its functions, structure and membrane topology.

Authors:  G Vergéres; L Waskell
Journal:  Biochimie       Date:  1995       Impact factor: 4.079

Review 10.  The many roles of cytochrome b5.

Authors:  John B Schenkman; Ingela Jansson
Journal:  Pharmacol Ther       Date:  2003-02       Impact factor: 12.310

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  60 in total

Review 1.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

2.  Orientation determination of interfacial beta-sheet structures in situ.

Authors:  Khoi Tan Nguyen; John Thomas King; Zhan Chen
Journal:  J Phys Chem B       Date:  2010-07-01       Impact factor: 2.991

3.  Proton-evolved local-field solid-state NMR studies of cytochrome b5 embedded in bicelles, revealing both structural and dynamical information.

Authors:  Ronald Soong; Pieter E S Smith; Jiadi Xu; Kazutoshi Yamamoto; Sang-Choul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

4.  Bioinspired, Size-Tunable Self-Assembly of Polymer-Lipid Bilayer Nanodiscs.

Authors:  Thirupathi Ravula; Sudheer Kumar Ramadugu; Giacomo Di Mauro; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-10       Impact factor: 15.336

Review 5.  Solution NMR of membrane proteins in bilayer mimics: small is beautiful, but sometimes bigger is better.

Authors:  Sébastien F Poget; Mark E Girvin
Journal:  Biochim Biophys Acta       Date:  2007-09-20

6.  Structural biology of transmembrane domains: efficient production and characterization of transmembrane peptides by NMR.

Authors:  Jian Hu; Huajun Qin; Conggang Li; Mukesh Sharma; Timothy A Cross; Fei Philip Gao
Journal:  Protein Sci       Date:  2007-10       Impact factor: 6.725

7.  Influence of whole-body dynamics on 15N PISEMA NMR spectra of membrane proteins: a theoretical analysis.

Authors:  Santi Esteban-Martín; Erik Strandberg; Gustavo Fuertes; Anne S Ulrich; Jesús Salgado
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

8.  A model of the membrane-bound cytochrome b5-cytochrome P450 complex from NMR and mutagenesis data.

Authors:  Shivani Ahuja; Nicole Jahr; Sang-Choul Im; Subramanian Vivekanandan; Nataliya Popovych; Stéphanie V Le Clair; Rui Huang; Ronald Soong; Jiadi Xu; Kazutoshi Yamamoto; Ravi P Nanga; Angela Bridges; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Biol Chem       Date:  2013-05-24       Impact factor: 5.157

9.  A Minimal Functional Complex of Cytochrome P450 and FBD of Cytochrome P450 Reductase in Nanodiscs.

Authors:  Elke Prade; Mukesh Mahajan; Sang-Choul Im; Meng Zhang; Katherine A Gentry; G M Anantharamaiah; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2018-06-14       Impact factor: 15.336

10.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

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