Literature DB >> 27010607

Current strategies for protein production and purification enabling membrane protein structural biology.

Aditya Pandey1, Kyungsoo Shin1, Robin E Patterson1, Xiang-Qin Liu1, Jan K Rainey1,2.   

Abstract

Membrane proteins are still heavily under-represented in the protein data bank (PDB), owing to multiple bottlenecks. The typical low abundance of membrane proteins in their natural hosts makes it necessary to overexpress these proteins either in heterologous systems or through in vitro translation/cell-free expression. Heterologous expression of proteins, in turn, leads to multiple obstacles, owing to the unpredictability of compatibility of the target protein for expression in a given host. The highly hydrophobic and (or) amphipathic nature of membrane proteins also leads to challenges in producing a homogeneous, stable, and pure sample for structural studies. Circumventing these hurdles has become possible through the introduction of novel protein production protocols; efficient protein isolation and sample preparation methods; and, improvement in hardware and software for structural characterization. Combined, these advances have made the past 10-15 years very exciting and eventful for the field of membrane protein structural biology, with an exponential growth in the number of solved membrane protein structures. In this review, we focus on both the advances and diversity of protein production and purification methods that have allowed this growth in structural knowledge of membrane proteins through X-ray crystallography, nuclear magnetic resonance (NMR) spectroscopy, and cryo-electron microscopy (cryo-EM).

Keywords:  biologie structurale; enrichissement d’isotopes stables; expression et purification des protéines; fusion proteins; membrane protein; protein expression and purification; protéine membranaire; protéines de fusion; stable isotope enrichment; structural biology

Mesh:

Substances:

Year:  2016        PMID: 27010607      PMCID: PMC5752365          DOI: 10.1139/bcb-2015-0143

Source DB:  PubMed          Journal:  Biochem Cell Biol        ISSN: 0829-8211            Impact factor:   3.626


  307 in total

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Authors:  Sung-Kun Yim; Dong-Hyun Kim; Heung-Chae Jung; Jae-Gu Pan; Hyung-Sik Kang; Taeho Ahn; Chul-Ho Yun
Journal:  J Microbiol Biotechnol       Date:  2010-04       Impact factor: 2.351

3.  Prediction of the human membrane proteome.

Authors:  Linn Fagerberg; Kalle Jonasson; Gunnar von Heijne; Mathias Uhlén; Lisa Berglund
Journal:  Proteomics       Date:  2010-03       Impact factor: 3.984

4.  Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination.

Authors:  Robert C Tyler; Hassan K Sreenath; Shanteri Singh; David J Aceti; Craig A Bingman; John L Markley; Brian G Fox
Journal:  Protein Expr Purif       Date:  2005-04       Impact factor: 1.650

5.  Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase.

Authors:  D B Smith; K S Johnson
Journal:  Gene       Date:  1988-07-15       Impact factor: 3.688

Review 6.  Mammalian expression of isotopically labeled proteins for NMR spectroscopy.

Authors:  Mallika Sastry; Carole A Bewley; Peter D Kwong
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

7.  High-yield membrane protein expression from E. coli using an engineered outer membrane protein F fusion.

Authors:  Pin-Chuan Su; William Si; Deidre L Baker; Bryan W Berger
Journal:  Protein Sci       Date:  2013-02-21       Impact factor: 6.725

Review 8.  Production of heterologous proteins using the fission-yeast (Schizosaccharomyces pombe) expression system.

Authors:  Kaoru Takegawa; Hideki Tohda; Mayumi Sasaki; Alimjan Idiris; Takao Ohashi; Hiroyuki Mukaiyama; Yuko Giga-Hama; Hiromichi Kumagai
Journal:  Biotechnol Appl Biochem       Date:  2009-06-22       Impact factor: 2.431

9.  The G-protein-coupled receptors in the human genome form five main families. Phylogenetic analysis, paralogon groups, and fingerprints.

Authors:  Robert Fredriksson; Malin C Lagerström; Lars-Gustav Lundin; Helgi B Schiöth
Journal:  Mol Pharmacol       Date:  2003-06       Impact factor: 4.436

10.  The Fh8 tag: a fusion partner for simple and cost-effective protein purification in Escherichia coli.

Authors:  Sofia J Costa; Eduardo Coelho; Lara Franco; André Almeida; António Castro; Lucília Domingues
Journal:  Protein Expr Purif       Date:  2013-09-29       Impact factor: 1.650

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  26 in total

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Authors:  Marina N Vassylyeva; Sergiy Klyuyev; Alexey D Vassylyev; Hunter Wesson; Zhuo Zhang; Matthew B Renfrow; Hengbin Wang; N Patrick Higgins; Louise T Chow; Dmitry G Vassylyev
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

2.  Cell-Free Expression of a Plant Membrane Protein BrPT2 From Boesenbergia Rotunda.

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Journal:  Mol Biotechnol       Date:  2021-02-09       Impact factor: 2.695

3.  Expression and purification of functional insulin and insulin-like growth factor 1 holoreceptors from mammalian cells.

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Journal:  Anal Biochem       Date:  2017-08-19       Impact factor: 3.365

4.  Concentration-dependent changes to diffusion and chemical shift of internal standard molecules in aqueous and micellar solutions.

Authors:  Benjamin Morash; Muzaddid Sarker; Jan K Rainey
Journal:  J Biomol NMR       Date:  2018-06-06       Impact factor: 2.835

Review 5.  Apelinergic System Structure and Function.

Authors:  Kyungsoo Shin; Calem Kenward; Jan K Rainey
Journal:  Compr Physiol       Date:  2017-12-12       Impact factor: 9.090

6.  Membrane Protein Production and Purification from Escherichia coli and Sf9 Insect Cells.

Authors:  Yixin Liu; Ana Pavić; Joshua T Farley; Carine de Marcos Lousa; Adrian Goldman; Vincent L G Postis
Journal:  Methods Mol Biol       Date:  2020

7.  Bioactivity of the putative apelin proprotein expands the repertoire of apelin receptor ligands.

Authors:  Kyungsoo Shin; Nigel A Chapman; Muzaddid Sarker; Calem Kenward; Shuya K Huang; Nathan Weatherbee-Martin; Aditya Pandey; Denis J Dupré; Jan K Rainey
Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-05-22       Impact factor: 3.770

8.  A Highly Versatile Expression System for the Production of Multiply Phosphorylated Proteins.

Authors:  Phillip Zhu; Philip R Gafken; Ryan A Mehl; Richard B Cooley
Journal:  ACS Chem Biol       Date:  2019-06-17       Impact factor: 5.100

9.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

10.  Development of a cell-free protein synthesis system for practical use.

Authors:  Yaeta Endo
Journal:  Proc Jpn Acad Ser B Phys Biol Sci       Date:  2021       Impact factor: 3.493

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