Literature DB >> 22331896

Cellular solid-state nuclear magnetic resonance spectroscopy.

Marie Renault1, Ria Tommassen-van Boxtel, Martine P Bos, Jan Andries Post, Jan Tommassen, Marc Baldus.   

Abstract

Decrypting the structure, function, and molecular interactions of complex molecular machines in their cellular context and at atomic resolution is of prime importance for understanding fundamental physiological processes. Nuclear magnetic resonance is a well-established imaging method that can visualize cellular entities at the micrometer scale and can be used to obtain 3D atomic structures under in vitro conditions. Here, we introduce a solid-state NMR approach that provides atomic level insights into cell-associated molecular components. By combining dedicated protein production and labeling schemes with tailored solid-state NMR pulse methods, we obtained structural information of a recombinant integral membrane protein and the major endogenous molecular components in a bacterial environment. Our approach permits studying entire cellular compartments as well as cell-associated proteins at the same time and at atomic resolution.

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Year:  2012        PMID: 22331896      PMCID: PMC3323964          DOI: 10.1073/pnas.1116478109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Core structure of the outer membrane lipoprotein from Escherichia coli at 1.9 A resolution.

Authors:  W Shu; J Liu; H Ji; M Lu
Journal:  J Mol Biol       Date:  2000-06-16       Impact factor: 5.469

2.  High-resolution macromolecular NMR spectroscopy inside living cells.

Authors:  Z Serber; A T Keatinge-Clay; R Ledwidge; A E Kelly; S M Miller; V Dötsch
Journal:  J Am Chem Soc       Date:  2001-03-14       Impact factor: 15.419

3.  Secondary chemical shifts in immobilized peptides and proteins: a qualitative basis for structure refinement under magic angle spinning.

Authors:  S Luca; D V Filippov; J H van Boom; H Oschkinat; H J de Groot; M Baldus
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

4.  Role of a highly conserved bacterial protein in outer membrane protein assembly.

Authors:  Romé Voulhoux; Martine P Bos; Jeroen Geurtsen; Maarten Mols; Jan Tommassen
Journal:  Science       Date:  2003-01-10       Impact factor: 47.728

5.  Solid-state NMR spectroscopy on cellular preparations enhanced by dynamic nuclear polarization.

Authors:  Marie Renault; Shane Pawsey; Martine P Bos; Eline J Koers; Deepak Nand; Ria Tommassen-van Boxtel; Melanie Rosay; Jan Tommassen; Werner E Maas; Marc Baldus
Journal:  Angew Chem Int Ed Engl       Date:  2012-02-01       Impact factor: 15.336

6.  Con--mutants: class of mutants in Escherichia coli K-12 lacking a major cell wall protein and defective in conjugation and adsorption of a bacteriophage.

Authors:  R A Skurray; R E Hancock; P Reeves
Journal:  J Bacteriol       Date:  1974-09       Impact factor: 3.490

7.  In vivo biosynthesis of murein-lipoprotein of the outer membrane of E. coli.

Authors:  V Braun; V Bosch
Journal:  FEBS Lett       Date:  1973-08-15       Impact factor: 4.124

8.  Carbon-13 NMR spectroscopy of red blood cell suspensions.

Authors:  N A Matwiyoff; T E Needham
Journal:  Biochem Biophys Res Commun       Date:  1972-12-04       Impact factor: 3.575

9.  Structural analysis of oligosaccharides from lipopolysaccharide (LPS) of Escherichia coli K12 strain W3100 reveals a link between inner and outer core LPS biosynthesis.

Authors:  Sven Müller-Loennies; Buko Lindner; Helmut Brade
Journal:  J Biol Chem       Date:  2003-06-20       Impact factor: 5.157

10.  A three-dimensional molecular assembly model of a lipoprotein from the Escherichia coli outer membrane.

Authors:  M Inouye
Journal:  Proc Natl Acad Sci U S A       Date:  1974-06       Impact factor: 11.205

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  67 in total

1.  Membrane proteins, magic-angle spinning, and in-cell NMR.

Authors:  Gary J Pielak; Fang Tian
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

Review 2.  In-Cell Solid-State NMR: An Emerging Technique for the Study of Biological Membranes.

Authors:  Xavier L Warnet; Alexandre A Arnold; Isabelle Marcotte; Dror E Warschawski
Journal:  Biophys J       Date:  2015-12-15       Impact factor: 4.033

Review 3.  A Unique Tool for Cellular Structural Biology: In-cell NMR.

Authors:  Enrico Luchinat; Lucia Banci
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

Review 4.  Helical membrane protein conformations and their environment.

Authors:  Timothy A Cross; Dylan T Murray; Anthony Watts
Journal:  Eur Biophys J       Date:  2013-09-01       Impact factor: 1.733

5.  Protein dynamics elucidated by NMR technique.

Authors:  Conggang Li; Chun Tang; Maili Liu
Journal:  Protein Cell       Date:  2013-10       Impact factor: 14.870

Review 6.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

7.  A solid view of membrane proteins in situ.

Authors:  Marc Baldus
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

8.  Membrane protein structure determination in membrana.

Authors:  Yi Ding; Yong Yao; Francesca M Marassi
Journal:  Acc Chem Res       Date:  2013-06-24       Impact factor: 22.384

9.  NADPH oxidase-derived H2O2 subverts pathogen signaling by oxidative phosphotyrosine conversion to PB-DOPA.

Authors:  Luis A Alvarez; Lidija Kovačič; Javier Rodríguez; Jan-Hendrik Gosemann; Malgorzata Kubica; Gratiela G Pircalabioru; Florian Friedmacher; Ada Cean; Alina Ghişe; Mihai B Sărăndan; Prem Puri; Simon Daff; Erika Plettner; Alex von Kriegsheim; Billy Bourke; Ulla G Knaus
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-25       Impact factor: 11.205

10.  Combination of ¹⁵N reverse labeling and afterglow spectroscopy for assigning membrane protein spectra by magic-angle-spinning solid-state NMR: application to the multidrug resistance protein EmrE.

Authors:  James R Banigan; Anindita Gayen; Nathaniel J Traaseth
Journal:  J Biomol NMR       Date:  2013-03-29       Impact factor: 2.835

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