Literature DB >> 23387766

A comparison of radial keyhole strategies for high spatial and temporal resolution 4D contrast-enhanced MRI in small animal tumor models.

Ergys Subashi1, Everett J Moding, Gary P Cofer, James R MacFall, David G Kirsch, Yi Qi, G Allan Johnson.   

Abstract

PURPOSE: Dynamic contrast-enhanced (DCE) MRI has been widely used as a quantitative imaging method for monitoring tumor response to therapy. The simultaneous challenges of increasing temporal and spatial resolution in a setting where the signal from the much smaller voxel is weaker have made this MR technique difficult to implement in small-animal imaging. Existing protocols employed in preclinical DCE-MRI acquire a limited number of slices resulting in potentially lost information in the third dimension. This study describes and compares a family of four-dimensional (3D spatial + time), projection acquisition, radial keyhole-sampling strategies that support high spatial and temporal resolution.
METHODS: The 4D method is based on a RF-spoiled, steady-state, gradient-recalled sequence with minimal echo time. An interleaved 3D radial trajectory with a quasi-uniform distribution of points in k-space was used for sampling temporally resolved datasets. These volumes were reconstructed with three different k-space filters encompassing a range of possible radial keyhole strategies. The effect of k-space filtering on spatial and temporal resolution was studied in a 5 mM CuSO(4) phantom consisting of a meshgrid with 350-μm spacing and in 12 tumors from three cell lines (HT-29, LoVo, MX-1) and a primary mouse sarcoma model (three tumors∕group). The time-to-peak signal intensity was used to assess the effect of the reconstruction filters on temporal resolution. As a measure of heterogeneity in the third dimension, the authors analyzed the spatial distribution of the rate of transport (K(trans)) of the contrast agent across the endothelium barrier for several different types of tumors.
RESULTS: Four-dimensional radial keyhole imaging does not degrade the system spatial resolution. Phantom studies indicate there is a maximum 40% decrease in signal-to-noise ratio as compared to a fully sampled dataset. T1 measurements obtained with the interleaved radial technique do not differ significantly from those made with a conventional Cartesian spin-echo sequence. A bin-by-bin comparison of the distribution of the time-to-peak parameter shows that 4D radial keyhole reconstruction does not cause significant temporal blurring when a temporal resolution of 9.9 s is used for the subsamples of the keyhole data. In vivo studies reveal substantial tumor heterogeneity in the third spatial dimension that may be missed with lower resolution imaging protocols.
CONCLUSIONS: Volumetric keyhole imaging with projection acquisition provides a means to increase spatiotemporal resolution and coverage over that provided by existing 2D Cartesian protocols. Furthermore, there is no difference in temporal resolution between the higher spatial resolution keyhole reconstruction and the undersampled projection data. The technique allows one to measure complex heterogeneity of kinetic parameters with isotropic, microscopic spatial resolution.

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Year:  2013        PMID: 23387766      PMCID: PMC3562278          DOI: 10.1118/1.4774050

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  47 in total

1.  A spatially and temporally restricted mouse model of soft tissue sarcoma.

Authors:  David G Kirsch; Daniela M Dinulescu; John B Miller; Jan Grimm; Philip M Santiago; Nathan P Young; G Petur Nielsen; Bradley J Quade; Christopher J Chaber; Christian P Schultz; Osamu Takeuchi; Roderick T Bronson; Denise Crowley; Stanley J Korsmeyer; Sam S Yoon; Francis J Hornicek; Ralph Weissleder; Tyler Jacks
Journal:  Nat Med       Date:  2007-08-05       Impact factor: 53.440

2.  Rapid gridding reconstruction with a minimal oversampling ratio.

Authors:  Philip J Beatty; Dwight G Nishimura; John M Pauly
Journal:  IEEE Trans Med Imaging       Date:  2005-06       Impact factor: 10.048

3.  Processing of radial fast spin-echo data for obtaining T2 estimates from a single k-space data set.

Authors:  Maria I Altbach; Ali Bilgin; Zhiqiang Li; Eric W Clarkson; Theodore P Trouard; Arthur F Gmitro
Journal:  Magn Reson Med       Date:  2005-09       Impact factor: 4.668

4.  High frame-rate simultaneous bilateral breast DCE-MRI.

Authors:  Lawrence Dougherty; Gamaliel Isaac; Mark A Rosen; Linda W Nunes; Peter J Moate; Raymond C Boston; Mitchell D Schnall; Hee Kwon Song
Journal:  Magn Reson Med       Date:  2007-01       Impact factor: 4.668

5.  Optimized and combined T1 and B1 mapping technique for fast and accurate T1 quantification in contrast-enhanced abdominal MRI.

Authors:  Reto Treier; Andreas Steingoetter; Michael Fried; Werner Schwizer; Peter Boesiger
Journal:  Magn Reson Med       Date:  2007-03       Impact factor: 4.668

6.  T1 measurement of flowing blood and arterial input function determination for quantitative 3D T1-weighted DCE-MRI.

Authors:  Hai-Ling Margaret Cheng
Journal:  J Magn Reson Imaging       Date:  2007-05       Impact factor: 4.813

7.  Accelerated bilateral dynamic contrast-enhanced 3D spiral breast MRI using TSENSE.

Authors:  Misung Han; Bruce L Daniel; Brian A Hargreaves
Journal:  J Magn Reson Imaging       Date:  2008-12       Impact factor: 4.813

8.  Convolution kernel design and efficient algorithm for sampling density correction.

Authors:  Kenneth O Johnson; James G Pipe
Journal:  Magn Reson Med       Date:  2009-02       Impact factor: 4.668

9.  Uncertainty and bias in contrast concentration measurements using spoiled gradient echo pulse sequences.

Authors:  Matthias C Schabel; Dennis L Parker
Journal:  Phys Med Biol       Date:  2008-04-17       Impact factor: 3.609

10.  Pulmonary perfusion imaging in the rodent lung using dynamic contrast-enhanced MRI.

Authors:  Nilesh N Mistry; James Pollaro; Jiayu Song; Ming De Lin; G Allan Johnson
Journal:  Magn Reson Med       Date:  2008-02       Impact factor: 4.668

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  16 in total

1.  Dynamic contrast-enhanced MRI promotes early detection of toxin-induced acute kidney injury.

Authors:  Jamie R Privratsky; Nian Wang; Yi Qi; Jiafa Ren; Benjamin T Morris; John C Hunting; G Allan Johnson; Steven D Crowley
Journal:  Am J Physiol Renal Physiol       Date:  2018-12-05

2.  Accelerating volumetric cine MRI (VC-MRI) using undersampling for real-time 3D target localization/tracking in radiation therapy: a feasibility study.

Authors:  Wendy Harris; Fang-Fang Yin; Chunhao Wang; You Zhang; Jing Cai; Lei Ren
Journal:  Phys Med Biol       Date:  2017-12-14       Impact factor: 3.609

3.  Four-dimensional MRI of renal function in the developing mouse.

Authors:  Luke Xie; Ergys Subashi; Yi Qi; Mark A Knepper; G Allan Johnson
Journal:  NMR Biomed       Date:  2014-07-26       Impact factor: 4.044

4.  Evaluation of the effect of transcytolemmal water exchange analysis for therapeutic response assessment using DCE-MRI: a comparison study.

Authors:  Chunhao Wang; Ergys Subashi; Xiao Liang; Fang-Fang Yin; Zheng Chang
Journal:  Phys Med Biol       Date:  2016-06-08       Impact factor: 3.609

5.  Dynamic contrast-enhanced MR microscopy identifies regions of therapeutic response in a preclinical model of colorectal adenocarcinoma.

Authors:  Ergys Subashi; Yi Qi; G Allan Johnson
Journal:  Med Phys       Date:  2015-05       Impact factor: 4.071

6.  MRI measurement of blood-brain barrier transport with a rapid acquisition refocused echo (RARE) method.

Authors:  Jeffrey H Walton; Kit Fai Ng; Steven E Anderson; John C Rutledge
Journal:  Biochem Biophys Res Commun       Date:  2015-05-19       Impact factor: 3.575

7.  Tumor location, but not H3.3K27M, significantly influences the blood-brain-barrier permeability in a genetic mouse model of pediatric high-grade glioma.

Authors:  Ergys Subashi; Francisco J Cordero; Kyle G Halvorson; Yi Qi; John C Nouls; Oren J Becher; G Allan Johnson
Journal:  J Neurooncol       Date:  2015-10-28       Impact factor: 4.130

8.  An analysis of the uncertainty and bias in DCE-MRI measurements using the spoiled gradient-recalled echo pulse sequence.

Authors:  Ergys Subashi; Kingshuk R Choudhury; G Allan Johnson
Journal:  Med Phys       Date:  2014-03       Impact factor: 4.071

9.  Accelerated Brain DCE-MRI Using Iterative Reconstruction With Total Generalized Variation Penalty for Quantitative Pharmacokinetic Analysis: A Feasibility Study.

Authors:  Chunhao Wang; Fang-Fang Yin; John P Kirkpatrick; Zheng Chang
Journal:  Technol Cancer Res Treat       Date:  2016-05-23

10.  Dynamic fractal signature dissimilarity analysis for therapeutic response assessment using dynamic contrast-enhanced MRI.

Authors:  Chunhao Wang; Ergys Subashi; Fang-Fang Yin; Zheng Chang
Journal:  Med Phys       Date:  2016-03       Impact factor: 4.071

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