Literature DB >> 21826519

Cryogenic temperature effects and resolution upon slow cooling of protein preparations in solid state NMR.

Arne H Linden1, W Trent Franks, Ümit Akbey, Sascha Lange, Barth-Jan van Rossum, Hartmut Oschkinat.   

Abstract

X-ray crystallography using synchrotron radiation and the technique of dynamic nuclear polarization (DNP) in nuclear magnetic resonance (NMR) require samples to be kept at temperatures below 100 K. Protein dynamics are poorly understood below the freezing point of water and down to liquid nitrogen temperatures. Therefore, we investigate the α-spectrin SH3 domain by magic angle spinning (MAS) solid state NMR (ssNMR) at various temperatures while cooling slowly. Cooling down to 95 K, the NMR-signals of SH3 first broaden and at lower temperatures they separate into several peaks. The coalescence temperature differs depending on the individual residue. The broadening is shown to be inhomogeneous by hole-burning experiments. The coalescence behavior of 26 resolved signals (of 62) was compared to water proximity and crystal structure Debye-Waller factors (B-factors). Close proximity to the solvent and large B-factors (i.e. mobility) lead, generally, to a higher coalescence temperature. We interpret a high coalescence temperature as indicative of a large number of magnetically inequivalent populations at cryogenic temperature. © Springer Science+Business Media B.V. 2011

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21826519     DOI: 10.1007/s10858-011-9535-z

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  36 in total

1.  Surface enhanced NMR spectroscopy by dynamic nuclear polarization.

Authors:  Anne Lesage; Moreno Lelli; David Gajan; Marc A Caporini; Veronika Vitzthum; Pascal Miéville; Johan Alauzun; Arthur Roussey; Chloé Thieuleux; Ahmad Mehdi; Geoffrey Bodenhausen; Christophe Copéret; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

2.  Protein structure determination by high-resolution solid-state NMR spectroscopy: application to microcrystalline ubiquitin.

Authors:  Stephan G Zech; A Joshua Wand; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

3.  Onsets of anharmonicity in protein dynamics.

Authors:  J H Roh; V N Novikov; R B Gregory; J E Curtis; Z Chowdhuri; A P Sokolov
Journal:  Phys Rev Lett       Date:  2005-07-12       Impact factor: 9.161

4.  Dynamic transition in tRNA is solvent induced.

Authors:  Gokhan Caliskan; Robert M Briber; D Thirumalai; Victoria Garcia-Sakai; Sarah A Woodson; Alexei P Sokolov
Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

5.  Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

Authors:  Umit Akbey; Sascha Lange; W Trent Franks; Rasmus Linser; Kristina Rehbein; Anne Diehl; Barth-Jan van Rossum; Bernd Reif; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-08-22       Impact factor: 2.835

6.  Probing surface accessibility of proteins using paramagnetic relaxation in solid-state NMR spectroscopy.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

7.  Solid-state NMR and SAXS studies provide a structural basis for the activation of alphaB-crystallin oligomers.

Authors:  Stefan Jehle; Ponni Rajagopal; Benjamin Bardiaux; Stefan Markovic; Ronald Kühne; Joseph R Stout; Victoria A Higman; Rachel E Klevit; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  Nat Struct Mol Biol       Date:  2010-08-29       Impact factor: 15.369

8.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

9.  Towards an interpretation of 13C chemical shifts in bathorhodopsin, a functional intermediate of a G-protein coupled receptor.

Authors:  Axel Gansmüller; Maria Concistrè; Neville McLean; Ole G Johannessen; Ildefonso Marín-Montesinos; Petra H M Bovee-Geurts; Peter Verdegem; Johan Lugtenburg; Richard C D Brown; Willem J Degrip; Malcolm H Levitt
Journal:  Biochim Biophys Acta       Date:  2009-03-03

10.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

View more
  31 in total

1.  Modulation of Transmembrane Domain Interactions in Neu Receptor Tyrosine Kinase by Membrane Fluidity and Cholesterol.

Authors:  Muhammad Hasan; Dharmesh Patel; Natalie Ellis; Steven P Brown; Józef R Lewandowski; Ann M Dixon
Journal:  J Membr Biol       Date:  2019-06-20       Impact factor: 1.843

2.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

3.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

4.  Line-Broadening in Low-Temperature Solid-State NMR Spectra of Fibrils.

Authors:  Thomas Bauer; Claudio Dotta; Livia Balacescu; Julia Gath; Andreas Hunkeler; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2017-02-04       Impact factor: 2.835

5.  On the use of ultracentrifugal devices for sedimented solute NMR.

Authors:  Ivano Bertini; Frank Engelke; Leonardo Gonnelli; Benno Knott; Claudio Luchinat; David Osen; Enrico Ravera
Journal:  J Biomol NMR       Date:  2012-08-08       Impact factor: 2.835

6.  Solid-state NMR enhanced by dynamic nuclear polarization as a novel tool for ribosome structural biology.

Authors:  Ioannis Gelis; Veronika Vitzthum; Neha Dhimole; Marc A Caporini; Andreas Schedlbauer; Diego Carnevale; Sean R Connell; Paola Fucini; Geoffrey Bodenhausen
Journal:  J Biomol NMR       Date:  2013-05-21       Impact factor: 2.835

7.  NMR-based structural biology enhanced by dynamic nuclear polarization at high magnetic field.

Authors:  Eline J Koers; Elwin A W van der Cruijsen; Melanie Rosay; Markus Weingarth; Alexander Prokofyev; Claire Sauvée; Olivier Ouari; Johan van der Zwan; Olaf Pongs; Paul Tordo; Werner E Maas; Marc Baldus
Journal:  J Biomol NMR       Date:  2014-10-05       Impact factor: 2.835

8.  High resolution observed in 800 MHz DNP spectra of extremely rigid type III secretion needles.

Authors:  Pascal Fricke; Deni Mance; Veniamin Chevelkov; Karin Giller; Stefan Becker; Marc Baldus; Adam Lange
Journal:  J Biomol NMR       Date:  2016-06-28       Impact factor: 2.835

Review 9.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

10.  NMR Signal Quenching from Bound Biradical Affinity Reagents in DNP Samples.

Authors:  Rivkah Rogawski; Ivan V Sergeyev; Yinglu Zhang; Timothy H Tran; Yongjun Li; Liang Tong; Ann E McDermott
Journal:  J Phys Chem B       Date:  2017-11-29       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.