Literature DB >> 25284462

NMR-based structural biology enhanced by dynamic nuclear polarization at high magnetic field.

Eline J Koers1, Elwin A W van der Cruijsen, Melanie Rosay, Markus Weingarth, Alexander Prokofyev, Claire Sauvée, Olivier Ouari, Johan van der Zwan, Olaf Pongs, Paul Tordo, Werner E Maas, Marc Baldus.   

Abstract

Dynamic nuclear polarization (DNP) has become a powerful method to enhance spectroscopic sensitivity in the context of magnetic resonance imaging and nuclear magnetic resonance spectroscopy. We show that, compared to DNP at lower field (400 MHz/263 GHz), high field DNP (800 MHz/527 GHz) can significantly enhance spectral resolution and allows exploitation of the paramagnetic relaxation properties of DNP polarizing agents as direct structural probes under magic angle spinning conditions. Applied to a membrane-embedded K(+) channel, this approach allowed us to refine the membrane-embedded channel structure and revealed conformational substates that are present during two different stages of the channel gating cycle. High-field DNP thus offers atomic insight into the role of molecular plasticity during the course of biomolecular function in a complex cellular environment.

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Year:  2014        PMID: 25284462     DOI: 10.1007/s10858-014-9865-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  64 in total

1.  Characterization of membrane proteins in isolated native cellular membranes by dynamic nuclear polarization solid-state NMR spectroscopy without purification and reconstitution.

Authors:  Tomas Jacso; W Trent Franks; Honor Rose; Uwe Fink; Jana Broecker; Sandro Keller; Hartmut Oschkinat; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-23       Impact factor: 15.336

2.  Cellular solid-state nuclear magnetic resonance spectroscopy.

Authors:  Marie Renault; Ria Tommassen-van Boxtel; Martine P Bos; Jan Andries Post; Jan Tommassen; Marc Baldus
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-13       Impact factor: 11.205

3.  Solid-state NMR spectroscopy of oriented membrane polypeptides at 100 K with signal enhancement by dynamic nuclear polarization.

Authors:  Evgeniy Salnikov; Melanie Rosay; Shane Pawsey; Olivier Ouari; Paul Tordo; Burkhard Bechinger
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

4.  Structural rearrangements of membrane proteins probed by water-edited solid-state NMR spectroscopy.

Authors:  Christian Ader; Robert Schneider; Karsten Seidel; Manuel Etzkorn; Stefan Becker; Marc Baldus
Journal:  J Am Chem Soc       Date:  2009-01-14       Impact factor: 15.419

5.  Polarization-enhanced NMR spectroscopy of biomolecules in frozen solution.

Authors:  D A Hall; D C Maus; G J Gerfen; S J Inati; L R Becerra; F W Dahlquist; R G Griffin
Journal:  Science       Date:  1997-05-09       Impact factor: 47.728

6.  Quantitative analysis of the water occupancy around the selectivity filter of a K+ channel in different gating modes.

Authors:  Markus Weingarth; Elwin A W van der Cruijsen; Jared Ostmeyer; Sylke Lievestro; Benoît Roux; Marc Baldus
Journal:  J Am Chem Soc       Date:  2014-01-22       Impact factor: 15.419

7.  Dynamic nuclear polarization-enhanced solid-state NMR of a 13C-labeled signal peptide bound to lipid-reconstituted Sec translocon.

Authors:  Lenica Reggie; Jakob J Lopez; Ian Collinson; Clemens Glaubitz; Mark Lorch
Journal:  J Am Chem Soc       Date:  2011-11-07       Impact factor: 15.419

8.  Quantum mechanical theory of dynamic nuclear polarization in solid dielectrics.

Authors:  Kan-Nian Hu; Galia T Debelouchina; Albert A Smith; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

9.  Dynamic nuclear polarization surface enhanced NMR spectroscopy.

Authors:  Aaron J Rossini; Alexandre Zagdoun; Moreno Lelli; Anne Lesage; Christophe Copéret; Lyndon Emsley
Journal:  Acc Chem Res       Date:  2013-03-21       Impact factor: 22.384

Review 10.  Studying the structure and dynamics of biomolecules by using soluble paramagnetic probes.

Authors:  Henry G Hocking; Klaus Zangger; Tobias Madl
Journal:  Chemphyschem       Date:  2013-07-08       Impact factor: 3.102

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  30 in total

1.  Molecular Rationale for Improved Dynamic Nuclear Polarization of Biomembranes.

Authors:  Adam N Smith; Umar T Twahir; Thierry Dubroca; Gail E Fanucci; Joanna R Long
Journal:  J Phys Chem B       Date:  2016-08-04       Impact factor: 2.991

Review 2.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

3.  Probing Conformational Changes during the Gating Cycle of a Potassium Channel in Lipid Bilayers.

Authors:  Elwin A W van der Cruijsen; Alexander V Prokofyev; Olaf Pongs; Marc Baldus
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

4.  Low-temperature dynamic nuclear polarization with helium-cooled samples and nitrogen-driven magic-angle spinning.

Authors:  Kent Thurber; Robert Tycko
Journal:  J Magn Reson       Date:  2016-03       Impact factor: 2.229

5.  High resolution observed in 800 MHz DNP spectra of extremely rigid type III secretion needles.

Authors:  Pascal Fricke; Deni Mance; Veniamin Chevelkov; Karin Giller; Stefan Becker; Marc Baldus; Adam Lange
Journal:  J Biomol NMR       Date:  2016-06-28       Impact factor: 2.835

Review 6.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

7.  Dynamic Nuclear Polarization Magic-Angle Spinning Nuclear Magnetic Resonance Combined with Molecular Dynamics Simulations Permits Detection of Order and Disorder in Viral Assemblies.

Authors:  Rupal Gupta; Huilan Zhang; Manman Lu; Guangjin Hou; Marc Caporini; Melanie Rosay; Werner Maas; Jochem Struppe; Jinwoo Ahn; In-Ja L Byeon; Hartmut Oschkinat; Kristaps Jaudzems; Emeline Barbet-Massin; Lyndon Emsley; Guido Pintacuda; Anne Lesage; Angela M Gronenborn; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2019-06-11       Impact factor: 2.991

8.  Direct dynamic nuclear polarization of 15N and 13C spins at 14.1 T using a trityl radical and magic angle spinning.

Authors:  Xiaoling Wang; Bethany G Caulkins; Gwladys Riviere; Leonard J Mueller; Frederic Mentink-Vigier; Joanna R Long
Journal:  Solid State Nucl Magn Reson       Date:  2019-04-02       Impact factor: 2.293

9.  Pulsed Dynamic Nuclear Polarization with Trityl Radicals.

Authors:  Guinevere Mathies; Sheetal Jain; Marcel Reese; Robert G Griffin
Journal:  J Phys Chem Lett       Date:  2015-12-21       Impact factor: 6.475

10.  NMR Signal Quenching from Bound Biradical Affinity Reagents in DNP Samples.

Authors:  Rivkah Rogawski; Ivan V Sergeyev; Yinglu Zhang; Timothy H Tran; Yongjun Li; Liang Tong; Ann E McDermott
Journal:  J Phys Chem B       Date:  2017-11-29       Impact factor: 2.991

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