Literature DB >> 19701607

Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

Umit Akbey1, Sascha Lange, W Trent Franks, Rasmus Linser, Kristina Rehbein, Anne Diehl, Barth-Jan van Rossum, Bernd Reif, Hartmut Oschkinat.   

Abstract

We present a systematic study of the effect of the level of exchangeable protons on the observed amide proton linewidth obtained in perdeuterated proteins. Decreasing the amount of D(2)O employed in the crystallization buffer from 90 to 0%, we observe a fourfold increase in linewidth for both (1)H and (15)N resonances. At the same time, we find a gradual increase in the signal-to-noise ratio (SNR) for (1)H-(15)N correlations in dipolar coupling based experiments for H(2)O concentrations of up to 40%. Beyond 40%, a significant reduction in SNR is observed. Scalar-coupling based (1)H-(15)N correlation experiments yield a nearly constant SNR for samples prepared with < or =30% H(2)O. Samples in which more H(2)O is employed for crystallization show a significantly reduced NMR intensity. Calculation of the SNR by taking into account the reduction in (1)H T (1) in samples containing more protons (SNR per unit time), yields a maximum SNR for samples crystallized using 30 and 40% H(2)O for scalar and dipolar coupling based experiments, respectively. A sensitivity gain of 3.8 is obtained by increasing the H(2)O concentration from 10 to 40% in the CP based experiment, whereas the linewidth only becomes 1.5 times broader. In general, we find that CP is more favorable compared to INEPT based transfer when the number of possible (1)H,(1)H interactions increases. At low levels of deuteration (> or =60% H(2)O in the crystallization buffer), resonances from rigid residues are broadened beyond detection. All experiments are carried out at MAS frequency of 24 kHz employing perdeuterated samples of the chicken alpha-spectrin SH3 domain.

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Year:  2009        PMID: 19701607     DOI: 10.1007/s10858-009-9369-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  15 in total

1.  Sensitivity enhancement in solid-state (13)C NMR of synthetic polymers and biopolymers by (1)H NMR detection with high-speed magic angle spinning.

Authors:  Y Ishii; J P Yesinowski; R Tycko
Journal:  J Am Chem Soc       Date:  2001-03-28       Impact factor: 15.419

2.  Sensitive high resolution inverse detection NMR spectroscopy of proteins in the solid state.

Authors:  Eric K Paulson; Corey R Morcombe; Vadim Gaponenko; Barbara Dancheck; R Andrew Byrd; Kurt W Zilm
Journal:  J Am Chem Soc       Date:  2003-12-24       Impact factor: 15.419

3.  Sensitivity and resolution in proton solid-state NMR at intermediate deuteration levels: quantitative linewidth characterization and applications to correlation spectroscopy.

Authors:  Donghua H Zhou; Daniel T Graesser; W Trent Franks; Chad M Rienstra
Journal:  J Magn Reson       Date:  2005-11-10       Impact factor: 2.229

4.  Ultrahigh resolution in proton solid-state NMR spectroscopy at high levels of deuteration.

Authors:  Veniamin Chevelkov; Kristina Rehbein; Anne Diehl; Bernd Reif
Journal:  Angew Chem Int Ed Engl       Date:  2006-06-02       Impact factor: 15.336

5.  Sensitivity enhancement in (13)C solid-state NMR of protein microcrystals by use of paramagnetic metal ions for optimizing (1)H T(1) relaxation.

Authors:  Nalinda P Wickramasinghe; Mrignayani Kotecha; Ago Samoson; Jaan Past; Yoshitaka Ishii
Journal:  J Magn Reson       Date:  2006-11-27       Impact factor: 2.229

6.  Rapid analysis of organic compounds by proton-detected heteronuclear correlation NMR spectroscopy with 40 kHz magic-angle spinning.

Authors:  Donghua H Zhou; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

7.  Proton-detected scalar coupling based assignment strategies in MAS solid-state NMR spectroscopy applied to perdeuterated proteins.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Magn Reson       Date:  2008-05-06       Impact factor: 2.229

8.  Sensitivity enhancement using paramagnetic relaxation in MAS solid-state NMR of perdeuterated proteins.

Authors:  Rasmus Linser; Veniamin Chevelkov; Anne Diehl; Bernd Reif
Journal:  J Magn Reson       Date:  2007-09-18       Impact factor: 2.229

9.  1H-15N correlation spectroscopy of nanocrystalline proteins.

Authors:  Corey R Morcombe; Eric K Paulson; Vadim Gaponenko; R Andrew Byrd; Kurt W Zilm
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

10.  Measurement of 15N-T1 relaxation rates in a perdeuterated protein by magic angle spinning solid-state nuclear magnetic resonance spectroscopy.

Authors:  Veniamin Chevelkov; Anne Diehl; Bernd Reif
Journal:  J Chem Phys       Date:  2008-02-07       Impact factor: 3.488

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  42 in total

1.  Three-dimensional deuterium-carbon correlation experiments for high-resolution solid-state MAS NMR spectroscopy of large proteins.

Authors:  Daniela Lalli; Paul Schanda; Anup Chowdhury; Joren Retel; Matthias Hiller; Victoria A Higman; Lieselotte Handel; Vipin Agarwal; Bernd Reif; Barth van Rossum; Umit Akbey; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2011-10-25       Impact factor: 2.835

2.  Assignment strategies for aliphatic protons in the solid-state in randomly protonated proteins.

Authors:  Sam Asami; Bernd Reif
Journal:  J Biomol NMR       Date:  2011-12-04       Impact factor: 2.835

3.  Backbone assignment of perdeuterated proteins using long-range H/C-dipolar transfers.

Authors:  Rasmus Linser
Journal:  J Biomol NMR       Date:  2011-12-14       Impact factor: 2.835

4.  Structure and backbone dynamics of a microcrystalline metalloprotein by solid-state NMR.

Authors:  Michael J Knight; Andrew J Pell; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Roberta Pierattelli; Torsten Herrmann; Lyndon Emsley; Guido Pintacuda
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-21       Impact factor: 11.205

5.  Narrow carbonyl resonances in proton-diluted proteins facilitate NMR assignments in the solid-state.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2010-03-16       Impact factor: 2.835

6.  Dynamic nuclear polarization of deuterated proteins.

Authors:  Ümit Akbey; W Trent Franks; Arne Linden; Sascha Lange; Robert G Griffin; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  Angew Chem Int Ed Engl       Date:  2010-10-11       Impact factor: 15.336

7.  Sensitivity and resolution of proton detected spectra of a deuterated protein at 40 and 60 kHz magic-angle-spinning.

Authors:  Andrew J Nieuwkoop; W Trent Franks; Kristina Rehbein; Anne Diehl; Ümit Akbey; Frank Engelke; Lyndon Emsley; Guido Pintacuda; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2015-02-08       Impact factor: 2.835

8.  Out-and-back 13C-13C scalar transfers in protein resonance assignment by proton-detected solid-state NMR under ultra-fast MAS.

Authors:  Emeline Barbet-Massin; Andrew J Pell; Kristaps Jaudzems; W Trent Franks; Joren S Retel; Svetlana Kotelovica; Inara Akopjana; Kaspars Tars; Lyndon Emsley; Hartmut Oschkinat; Anne Lesage; Guido Pintacuda
Journal:  J Biomol NMR       Date:  2013-06-29       Impact factor: 2.835

9.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

Review 10.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

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