Literature DB >> 16390107

Dynamic transition in tRNA is solvent induced.

Gokhan Caliskan1, Robert M Briber, D Thirumalai, Victoria Garcia-Sakai, Sarah A Woodson, Alexei P Sokolov.   

Abstract

Dynamics of tRNA was studied using neutron scattering spectroscopy. Despite vast differences in the architecture and backbone structure of proteins and RNA, hydrated tRNA undergoes the dynamic transition at the same temperature as hydrated lysozyme. The similarity of the dynamic transition in RNA and proteins supports the idea that it is solvent induced. Because tRNA essentially has no methyl groups, the results also suggest that methyl groups are not the main contributor of the dynamic transition in biological macromolecules. However, they may explain strong differences in the dynamics of tRNA and lysozyme observed at low temperatures.

Year:  2006        PMID: 16390107     DOI: 10.1021/ja056444i

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  24 in total

1.  Thermodynamics of RNA melting, one base pair at a time.

Authors:  Evgenia N Nikolova; Hashim M Al-Hashimi
Journal:  RNA       Date:  2010-07-21       Impact factor: 4.942

2.  Dynamics of biological macromolecules: not a simple slaving by hydration water.

Authors:  S Khodadadi; J H Roh; A Kisliuk; E Mamontov; M Tyagi; S A Woodson; R M Briber; A P Sokolov
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

3.  Effects of pressure on the dynamics of an oligomeric protein from deep-sea hyperthermophile.

Authors:  Utsab R Shrestha; Debsindhu Bhowmik; John R D Copley; Madhusudan Tyagi; Juscelino B Leão; Xiang-qiang Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-26       Impact factor: 11.205

4.  Influence of hydration on the dynamics of lysozyme.

Authors:  J H Roh; J E Curtis; S Azzam; V N Novikov; I Peral; Z Chowdhuri; R B Gregory; A P Sokolov
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

5.  Hydrostatic and osmotic pressure study of the RNA hydration.

Authors:  Małgorzata Giel-Pietraszuk; Jan Barciszewski
Journal:  Mol Biol Rep       Date:  2012-05       Impact factor: 2.316

6.  Influence of water clustering on the dynamics of hydration water at the surface of a lysozyme.

Authors:  Alla Oleinikova; Nikolai Smolin; Ivan Brovchenko
Journal:  Biophys J       Date:  2007-07-13       Impact factor: 4.033

7.  Thermal fluctuations of DNA enclosed by glycerol-water glassy matrices: an elastic neutron scattering investigation.

Authors:  E Cornicchi; S Capponi; M Marconi; G Onori; A Paciaroni
Journal:  Eur Biophys J       Date:  2008-01-23       Impact factor: 1.733

8.  Hydration dependent dynamics in sol-gel encapsulated myoglobin.

Authors:  Giorgio Schirò; Michele Sclafani; Francesca Natali; Antonio Cupane
Journal:  Eur Biophys J       Date:  2008-02-01       Impact factor: 1.733

9.  Dynamics of tRNA at different levels of hydration.

Authors:  J H Roh; R M Briber; A Damjanovic; D Thirumalai; S A Woodson; A P Sokolov
Journal:  Biophys J       Date:  2009-04-08       Impact factor: 4.033

10.  Coupling of protein and hydration-water dynamics in biological membranes.

Authors:  K Wood; M Plazanet; F Gabel; B Kessler; D Oesterhelt; D J Tobias; G Zaccai; M Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-06       Impact factor: 11.205

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