Literature DB >> 21582397

Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Tuncer Hökelek, Hakan Dal, Barış Tercan, F Elif Ozbek, Hacali Necefoğlu.   

Abstract

The title Ni(II) complex, [Ni(C(7)H(4)ClO(2))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], is centrosymmetric with the Ni atom located on an inversion centre. The mol-ecule contains two 2-chloro-benzoate (CB) and two nicotinamide (NA) ligands and two water mol-ecules, all ligands being monodentate. The four O atoms in the equatorial plane around the Ni atom form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl group and the adjacent benzene ring is 29.48 (16)°, while the pyridine and benzene rings are oriented at a dihedral angle of 83.16 (5)°. In the crystal structure, O-H⋯O and N-H⋯O hydrogen bonds link the mol-ecules into infinite chains. π-π Contacts between the benzene and pyridine rings [centroid-centroid distance = 3.952 (1) Å] may further stabilize the crystal structure. There is also a C-H⋯π inter-action.

Entities:  

Year:  2009        PMID: 21582397      PMCID: PMC2968958          DOI: 10.1107/S1600536809011209

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Antolini et al. (1982 ▶); Bigoli et al. (1972 ▶); Krishnamachari (1974 ▶); Nadzhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For related structures, see: Hökelek & Necefoğlu (1996 ▶, 1997 ▶, 2007 ▶); Hökelek et al. (1995 ▶, 1997 ▶, 2007 ▶, 2008 ▶); Özbek et al. (2009 ▶); Sertçelik et al. (2009 ▶,c ▶); Tercan et al. (2009 ▶).

Experimental

Crystal data

[Ni(C7H4ClO2)2(C6H6N2O)2(H2O)2] M = 650.10 Monoclinic, a = 7.8602 (3) Å b = 17.9529 (6) Å c = 9.8446 (3) Å β = 106.600 (2)° V = 1331.31 (8) Å3 Z = 2 Mo Kα radiation μ = 0.99 mm−1 T = 100 K 0.45 × 0.30 × 0.25 mm

Data collection

Bruker Kappa-APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.710, T max = 0.784 11754 measured reflections 3301 independent reflections 2626 reflections with I > 2σ(I) R int = 0.064

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.107 S = 1.07 3301 reflections 202 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.77 e Å−3 Δρmin = −0.69 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809011209/xu2501sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011209/xu2501Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C7H4ClO2)2(C6H6N2O)2(H2O)2]F(000) = 668
Mr = 650.10Dx = 1.622 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5500 reflections
a = 7.8602 (3) Åθ = 2.4–28.3°
b = 17.9529 (6) ŵ = 0.99 mm1
c = 9.8446 (3) ÅT = 100 K
β = 106.600 (2)°Block, orange
V = 1331.31 (8) Å30.45 × 0.30 × 0.25 mm
Z = 2
Bruker Kappa-APEXII CCD area-detector diffractometer3301 independent reflections
Radiation source: fine-focus sealed tube2626 reflections with I > 2σ(I)
graphiteRint = 0.064
φ and ω scansθmax = 28.3°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→7
Tmin = 0.710, Tmax = 0.784k = −23→21
11754 measured reflectionsl = −11→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0492P)2 + 1.0761P] where P = (Fo2 + 2Fc2)/3
3301 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.77 e Å3
1 restraintΔρmin = −0.69 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.00000.00000.01322 (13)
Cl10.40816 (8)0.28820 (3)−0.32584 (6)0.02186 (16)
O10.6153 (2)0.09893 (9)−0.04613 (15)0.0135 (3)
O20.3868 (2)0.13652 (10)−0.22542 (16)0.0155 (4)
O30.0484 (2)0.00967 (10)0.32471 (17)0.0183 (4)
O40.2363 (2)0.04330 (10)−0.08886 (17)0.0146 (4)
H410.261 (4)0.0763 (19)−0.141 (3)0.030 (9)*
H420.153 (3)0.0172 (16)−0.141 (3)0.029*
N10.4964 (3)0.04416 (10)0.19906 (19)0.0115 (4)
N20.1426 (3)0.08165 (13)0.5195 (2)0.0188 (5)
H210.221 (4)0.1030 (18)0.573 (3)0.026 (9)*
H220.060 (4)0.0657 (17)0.550 (3)0.023 (8)*
C10.5480 (3)0.13795 (13)−0.1555 (2)0.0121 (4)
C20.6718 (3)0.18573 (13)−0.2104 (2)0.0124 (5)
C30.8477 (3)0.16293 (13)−0.1863 (2)0.0143 (5)
H30.88870.1224−0.12710.017*
C40.9630 (3)0.19869 (14)−0.2478 (2)0.0164 (5)
H41.07970.1824−0.22940.020*
C50.9033 (3)0.25927 (14)−0.3375 (2)0.0166 (5)
H50.97890.2823−0.38200.020*
C60.7319 (3)0.28498 (14)−0.3601 (2)0.0154 (5)
H60.69260.3262−0.41790.019*
C70.6181 (3)0.24896 (13)−0.2959 (2)0.0129 (5)
C80.6344 (3)0.08184 (13)0.2847 (2)0.0132 (5)
H80.73790.08680.25770.016*
C90.6273 (3)0.11327 (14)0.4113 (2)0.0169 (5)
H90.72400.13930.46780.020*
C100.4743 (3)0.10541 (13)0.4526 (2)0.0152 (5)
H100.46680.12620.53720.018*
C110.3318 (3)0.06602 (13)0.3664 (2)0.0123 (4)
C120.3496 (3)0.03681 (13)0.2405 (2)0.0125 (5)
H120.25430.01080.18190.015*
C130.1630 (3)0.05107 (13)0.4022 (2)0.0142 (5)
U11U22U33U12U13U23
Ni10.0129 (2)0.0162 (2)0.00877 (19)−0.00046 (17)0.00017 (15)−0.00017 (15)
Cl10.0173 (3)0.0200 (3)0.0261 (3)0.0068 (2)0.0027 (2)0.0055 (2)
O10.0147 (8)0.0153 (8)0.0076 (7)−0.0023 (6)−0.0017 (6)0.0006 (6)
O20.0117 (8)0.0213 (9)0.0109 (7)−0.0014 (7)−0.0013 (6)0.0023 (6)
O30.0149 (9)0.0267 (10)0.0116 (7)−0.0053 (7)0.0013 (6)−0.0039 (7)
O40.0134 (9)0.0176 (9)0.0103 (7)−0.0009 (7)−0.0006 (6)0.0013 (6)
N10.0115 (9)0.0122 (10)0.0090 (8)0.0000 (7)−0.0002 (7)0.0004 (7)
N20.0157 (11)0.0294 (13)0.0116 (9)−0.0060 (9)0.0043 (8)−0.0067 (9)
C10.0148 (11)0.0124 (11)0.0082 (9)−0.0007 (9)0.0018 (8)−0.0030 (8)
C20.0154 (11)0.0129 (11)0.0072 (9)−0.0011 (9)0.0004 (8)−0.0023 (8)
C30.0147 (11)0.0137 (11)0.0112 (10)−0.0007 (9)−0.0016 (8)−0.0014 (8)
C40.0133 (11)0.0187 (12)0.0157 (11)−0.0020 (9)0.0016 (9)−0.0026 (9)
C50.0190 (12)0.0174 (12)0.0127 (10)−0.0053 (10)0.0035 (9)−0.0016 (9)
C60.0189 (12)0.0145 (12)0.0099 (10)−0.0022 (9)−0.0007 (8)0.0008 (8)
C70.0126 (11)0.0140 (11)0.0092 (10)0.0017 (9)−0.0013 (8)−0.0020 (8)
C80.0120 (11)0.0154 (12)0.0109 (10)−0.0009 (9)0.0010 (8)0.0006 (8)
C90.0155 (12)0.0196 (13)0.0125 (10)−0.0047 (10)−0.0012 (9)−0.0033 (9)
C100.0177 (12)0.0188 (12)0.0071 (9)−0.0023 (9)0.0005 (8)−0.0028 (8)
C110.0134 (11)0.0134 (11)0.0082 (9)−0.0007 (9)−0.0001 (8)0.0007 (8)
C120.0131 (11)0.0123 (11)0.0091 (9)−0.0006 (9)−0.0018 (8)0.0011 (8)
C130.0132 (11)0.0180 (12)0.0097 (9)0.0004 (9)0.0008 (8)0.0017 (8)
Ni1—O1i2.1017 (16)C3—H30.9300
Ni1—O12.1017 (16)C4—C31.383 (3)
Ni1—O42.1520 (16)C4—C51.395 (3)
Ni1—O4i2.1520 (16)C4—H40.9300
Ni1—N1i2.1217 (18)C5—C61.381 (3)
Ni1—N12.1217 (18)C5—H50.9300
Cl1—C71.740 (2)C6—H60.9300
O1—C11.267 (3)C7—C21.404 (3)
O2—C11.258 (3)C7—C61.393 (3)
O3—C131.246 (3)C8—C91.384 (3)
O4—H410.85 (3)C8—H80.9300
O4—H420.850 (18)C9—H90.9300
N1—C81.350 (3)C10—C91.382 (3)
N1—C121.335 (3)C10—H100.9300
N2—C131.329 (3)C11—C101.390 (3)
N2—H210.79 (3)C11—C121.389 (3)
N2—H220.84 (3)C11—C131.492 (3)
C1—C21.508 (3)C12—H120.9300
C2—C31.396 (3)
O1i—Ni1—O1180.00 (5)C4—C3—C2122.0 (2)
O1i—Ni1—O488.18 (6)C4—C3—H3119.0
O1—Ni1—O491.82 (6)C3—C4—C5119.7 (2)
O1i—Ni1—O4i91.82 (6)C3—C4—H4120.2
O1—Ni1—O4i88.18 (6)C5—C4—H4120.2
O4—Ni1—O4i180.00 (9)C4—C5—H5120.1
O1i—Ni1—N1i90.24 (7)C6—C5—C4119.9 (2)
O1—Ni1—N1i89.76 (7)C6—C5—H5120.1
O1i—Ni1—N189.76 (7)C5—C6—C7119.7 (2)
O1—Ni1—N190.24 (7)C5—C6—H6120.2
N1i—Ni1—N1180.00 (14)C7—C6—H6120.2
N1i—Ni1—O491.44 (7)C2—C7—Cl1122.46 (19)
N1—Ni1—O488.56 (7)C6—C7—Cl1115.85 (18)
N1i—Ni1—O4i88.56 (7)C6—C7—C2121.7 (2)
N1—Ni1—O4i91.44 (7)N1—C8—C9122.3 (2)
Ni1—O4—H4198 (2)N1—C8—H8118.8
Ni1—O4—H42122 (2)C9—C8—H8118.8
H41—O4—H42107 (3)C8—C9—H9120.5
C1—O1—Ni1123.37 (14)C10—C9—C8119.1 (2)
C8—N1—Ni1122.93 (16)C10—C9—H9120.5
C12—N1—Ni1119.06 (14)C9—C10—C11119.3 (2)
C12—N1—C8117.97 (19)C9—C10—H10120.4
C13—N2—H21121 (2)C11—C10—H10120.4
C13—N2—H22118 (2)C10—C11—C13124.3 (2)
H22—N2—H21118 (3)C12—C11—C10117.9 (2)
O1—C1—C2117.6 (2)C12—C11—C13117.80 (19)
O2—C1—O1124.4 (2)N1—C12—C11123.4 (2)
O2—C1—C2117.89 (19)N1—C12—H12118.3
C3—C2—C1118.8 (2)C11—C12—H12118.3
C3—C2—C7116.9 (2)O3—C13—N2122.2 (2)
C7—C2—C1124.1 (2)O3—C13—C11119.9 (2)
C2—C3—H3119.0N2—C13—C11117.9 (2)
O4—Ni1—O1—C1−35.17 (18)C1—C2—C3—C4172.0 (2)
O4i—Ni1—O1—C1144.83 (18)C7—C2—C3—C4−2.5 (3)
N1i—Ni1—O1—C156.26 (18)C5—C4—C3—C2−0.3 (3)
N1—Ni1—O1—C1−123.74 (18)C3—C4—C5—C62.5 (3)
O1i—Ni1—N1—C8136.61 (18)C4—C5—C6—C7−1.7 (3)
O1—Ni1—N1—C8−43.39 (18)Cl1—C7—C2—C110.4 (3)
O1i—Ni1—N1—C12−45.66 (17)Cl1—C7—C2—C3−175.42 (16)
O1—Ni1—N1—C12134.34 (17)C6—C7—C2—C1−170.8 (2)
O4—Ni1—N1—C1242.53 (17)C6—C7—C2—C33.4 (3)
O4i—Ni1—N1—C12−137.47 (17)Cl1—C7—C6—C5177.53 (17)
O4—Ni1—N1—C8−135.20 (18)C2—C7—C6—C5−1.3 (3)
O4i—Ni1—N1—C844.80 (18)N1—C8—C9—C100.6 (4)
Ni1—O1—C1—O222.1 (3)C11—C10—C9—C80.2 (4)
Ni1—O1—C1—C2−154.02 (15)C12—C11—C10—C9−0.7 (3)
Ni1—N1—C8—C9176.99 (17)C13—C11—C10—C9177.3 (2)
C12—N1—C8—C9−0.8 (3)C10—C11—C12—N10.5 (3)
Ni1—N1—C12—C11−177.65 (17)C13—C11—C12—N1−177.6 (2)
C8—N1—C12—C110.2 (3)C10—C11—C13—O3−173.6 (2)
O1—C1—C2—C328.5 (3)C10—C11—C13—N24.8 (4)
O1—C1—C2—C7−157.4 (2)C12—C11—C13—O34.4 (3)
O2—C1—C2—C3−147.9 (2)C12—C11—C13—N2−177.1 (2)
O2—C1—C2—C726.2 (3)
D—H···AD—HH···AD···AD—H···A
O4—H41···O20.84 (4)1.82 (3)2.630 (2)161 (3)
O4—H42···O3ii0.85 (3)2.09 (3)2.887 (2)156 (3)
N2—H21···O2iii0.79 (3)2.13 (3)2.865 (3)156 (3)
N2—H22···O3iv0.84 (3)2.16 (3)2.934 (3)153 (3)
C9—H9···Cg1iii0.932.883.596 (2)135
Table 1

Selected geometric parameters (Å, °)

Ni1—O12.1017 (16)
Ni1—O42.1520 (16)
Ni1—N12.1217 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H41⋯O20.84 (4)1.82 (3)2.630 (2)161 (3)
O4—H42⋯O3ii0.85 (3)2.09 (3)2.887 (2)156 (3)
N2—H21⋯O2iii0.79 (3)2.13 (3)2.865 (3)156 (3)
N2—H22⋯O3iv0.84 (3)2.16 (3)2.934 (3)153 (3)
C9—H9⋯Cg1iii0.932.883.596 (2)135

Symmetry codes: (ii) ; (iii) ; (iv) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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3.  Bis[4-(methyl-amino)benzoato-κO]bis-(nicotinamide-κN)zinc(II).

Authors:  Barış Tercan; Tuncer Hökelek; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20

4.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)cobalt(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-11

5.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)nickel(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

6.  Diaqua-bis(4-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  Tuncer Hökelek; Nagihan Caylak; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-29

7.  Tetra-aqua-bis(nicotinamide-κN)cobalt(II) bis-(2-fluoro-benzoate).

Authors:  F Elif Ozbek; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-28

8.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)manganese(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25
  8 in total
  35 in total

1.  Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)manganese(II).

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Hakan Dal; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-10

2.  Diaqua-bis(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

3.  Diaqua-bis[4-(dimethyl-amino)benzoato-κO](isonicotinamide-κN)manganese(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

4.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-methyl-benzoato-κO)cobalt(II).

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Emel Ermiş; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-21

5.  Tetra-aqua-bis[4-(methyl-amino)benzoato-κO]nickel(II).

Authors:  Hacali Necefoğlu; Ozgür Aybirdi; Barış Tercan; Yasemin Süzen; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

6.  Di-aqua-bis-(3-chloro-benzoato-κO)bis-(nicotinamide-κN (1))cobalt(II).

Authors:  Nihat Bozkurt; Nefise Dilek; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-31

7.  Diaqua-bis-(4-meth-oxy-benzoato-κO)bis-(nicotinamide-κN)cobalt(II) dihydrate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10

8.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN(1))bis-(4-formyl-benzoato-κO(1))zinc.

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-14

9.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))cobalt(II).

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18

10.  Diaqua-bis-(2-chloro-benzoato-κO)bis-(nicotinamide-κN (1))cobalt(II).

Authors:  Oznur Dincel; Barış Tercan; Füreya Elif Oztürkkan; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-28
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