Literature DB >> 21582339

Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)cobalt(II).

Mustafa Sertçelik, Barış Tercan, Ertan Sahin, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the crystal structure of the title Co(II) complex, [Co(C(8)H(5)O(3))(2)(C(10)H(14)N(2)O)(2)(H(2)O)(2)], the metal centre is located on an inversion center and is coordinated by two 4-formyl-benzoate (FOB), two diethyl-nicotinamide (DENA) ligands and two water mol-ecules in a slightly distorted CoO(4)N(2) octa-hedral geometry. In the crystal structure, O-H⋯O hydrogen bonds link the mol-ecules into infinite chains. π-π contacts between the parallel pyridine rings of neighboring DENA ligands [centroid-centroid distance = 3.652 (3) Å] further stabilize the crystal structure.

Entities:  

Year:  2009        PMID: 21582339      PMCID: PMC2968947          DOI: 10.1107/S1600536809008265

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Antolini et al. (1982 ▶); Bigoli et al. (1972 ▶); Nadzhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For related structures, see: Hökelek et al. (1995 ▶, 1997 ▶, 2007 ▶, 2008 ▶); Hökelek & Necefoğlu (1996 ▶, 1997 ▶, 2007 ▶); Sertçelik et al. (2009a ▶, 2009b ▶).

Experimental

Crystal data

[Co(C8H5O3)2(C10H14N2O)2(H2O)2] M = 749.67 Triclinic, a = 7.2962 (2) Å b = 8.6863 (3) Å c = 15.9453 (5) Å α = 85.433 (2)° β = 78.608 (3)° γ = 68.022 (2)° V = 918.64 (5) Å3 Z = 1 Mo Kα radiation μ = 0.53 mm−1 T = 294 K 0.35 × 0.25 × 0.15 mm

Data collection

Rigaku R-AXIS RAPID-S diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.853, T max = 0.926 19487 measured reflections 3755 independent reflections 3016 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.195 S = 1.07 3755 reflections 246 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.02 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809008265/xu2489sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809008265/xu2489Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C8H5O3)2(C10H14N2O)2(H2O)2]Z = 1
Mr = 749.67F(000) = 393
Triclinic, P1Dx = 1.355 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.2962 (2) ÅCell parameters from 4172 reflections
b = 8.6863 (3) Åθ = 2.5–26.4°
c = 15.9453 (5) ŵ = 0.53 mm1
α = 85.433 (2)°T = 294 K
β = 78.608 (3)°Prism, red
γ = 68.022 (2)°0.35 × 0.25 × 0.15 mm
V = 918.64 (5) Å3
Rigaku R-AXIS RAPID-S diffractometer3755 independent reflections
Radiation source: fine-focus sealed tube3016 reflections with I > 2σ(I)
graphiteRint = 0.074
ω scansθmax = 26.4°, θmin = 2.5°
Absorption correction: multi-scan (Blessing, 1995)h = −9→9
Tmin = 0.853, Tmax = 0.926k = −10→10
19487 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.195H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0999P)2 + 0.5936P] where P = (Fo2 + 2Fc2)/3
3755 reflections(Δ/σ)max < 0.001
246 parametersΔρmax = 1.02 e Å3
3 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.50000.00000.00000.0386 (3)
O10.4778 (5)−0.1144 (4)−0.10591 (18)0.0473 (7)
O20.7579 (5)−0.1290 (4)−0.1979 (2)0.0555 (8)
O30.0578 (8)−0.1907 (7)−0.4559 (3)0.0958 (15)
O4−0.2309 (5)0.3315 (4)−0.1246 (2)0.0585 (9)
O50.2256 (5)−0.0208 (4)0.0630 (2)0.0506 (8)
H510.224 (10)−0.126 (4)0.080 (3)0.09 (2)*
H520.214 (9)0.033 (5)0.113 (2)0.075 (18)*
N10.3188 (5)0.2363 (4)−0.0485 (2)0.0419 (8)
N2−0.1116 (7)0.4197 (6)−0.2512 (3)0.0609 (11)
C10.5813 (6)−0.1268 (5)−0.1802 (3)0.0422 (9)
C20.4825 (6)−0.1361 (5)−0.2530 (3)0.0418 (9)
C30.5824 (7)−0.1374 (6)−0.3370 (3)0.0496 (11)
H30.7097−0.1317−0.34800.060*
C40.4938 (8)−0.1471 (7)−0.4037 (3)0.0570 (12)
H40.5613−0.1474−0.45960.068*
C50.3035 (8)−0.1566 (6)−0.3882 (3)0.0546 (11)
C60.2016 (7)−0.1530 (6)−0.3045 (3)0.0510 (11)
H60.0741−0.1583−0.29340.061*
C70.2906 (7)−0.1417 (6)−0.2383 (3)0.0463 (10)
H70.2213−0.1377−0.18240.056*
C80.2121 (10)−0.1698 (9)−0.4608 (4)0.0750 (16)
H810.294 (9)−0.169 (7)−0.522 (4)0.086 (19)*
C90.3415 (6)0.3797 (5)−0.0385 (3)0.0439 (10)
H90.43660.3784−0.00700.053*
C100.2310 (7)0.5285 (6)−0.0724 (3)0.0494 (10)
H100.25020.6255−0.06360.059*
C110.0905 (7)0.5306 (5)−0.1200 (3)0.0478 (10)
H110.01570.6287−0.14490.057*
C120.0637 (6)0.3839 (5)−0.1299 (3)0.0426 (9)
C130.1798 (6)0.2402 (5)−0.0936 (3)0.0419 (9)
H130.16130.1421−0.10050.050*
C14−0.1028 (7)0.3743 (6)−0.1700 (3)0.0468 (10)
C150.0391 (10)0.4689 (8)−0.3107 (3)0.0732 (16)
H15A0.13010.4851−0.27850.088*
H15B−0.02880.5745−0.33700.088*
C160.1577 (13)0.3470 (13)−0.3789 (6)0.136 (4)
H16A0.26010.3820−0.41230.203*
H16B0.07090.3392−0.41510.203*
H16C0.21930.2404−0.35360.203*
C17−0.2911 (10)0.4212 (8)−0.2844 (4)0.0754 (16)
H17A−0.41140.4706−0.24200.090*
H17B−0.30490.4888−0.33590.090*
C18−0.2719 (12)0.2533 (8)−0.3035 (5)0.097 (2)
H18A−0.38280.2589−0.32900.146*
H18B−0.27210.1894−0.25150.146*
H18C−0.14830.2014−0.34240.146*
U11U22U33U12U13U23
Co10.0376 (5)0.0409 (5)0.0385 (5)−0.0145 (3)−0.0104 (3)0.0022 (3)
O10.0497 (17)0.0557 (18)0.0396 (16)−0.0214 (15)−0.0118 (13)0.0004 (13)
O20.0445 (18)0.069 (2)0.0525 (18)−0.0191 (16)−0.0098 (14)−0.0061 (16)
O30.100 (3)0.148 (5)0.068 (3)−0.070 (3)−0.032 (2)0.002 (3)
O40.0547 (19)0.070 (2)0.062 (2)−0.0353 (18)−0.0136 (16)0.0081 (17)
O50.0472 (18)0.059 (2)0.0508 (18)−0.0255 (16)−0.0102 (14)0.0031 (15)
N10.0381 (18)0.0404 (19)0.049 (2)−0.0148 (15)−0.0127 (15)0.0019 (15)
N20.065 (3)0.077 (3)0.054 (2)−0.036 (2)−0.023 (2)0.010 (2)
C10.043 (2)0.038 (2)0.044 (2)−0.0119 (18)−0.0106 (18)−0.0002 (17)
C20.044 (2)0.039 (2)0.041 (2)−0.0131 (18)−0.0086 (17)0.0002 (17)
C30.044 (2)0.055 (3)0.049 (2)−0.018 (2)−0.0040 (19)−0.001 (2)
C40.065 (3)0.071 (3)0.037 (2)−0.028 (3)−0.006 (2)−0.001 (2)
C50.061 (3)0.062 (3)0.045 (2)−0.026 (2)−0.014 (2)0.000 (2)
C60.049 (3)0.061 (3)0.048 (3)−0.025 (2)−0.012 (2)0.001 (2)
C70.047 (2)0.050 (2)0.041 (2)−0.020 (2)−0.0047 (18)0.0025 (18)
C80.083 (4)0.106 (5)0.050 (3)−0.046 (4)−0.017 (3)−0.003 (3)
C90.041 (2)0.047 (2)0.048 (2)−0.0174 (19)−0.0145 (18)0.0010 (18)
C100.054 (3)0.044 (2)0.056 (3)−0.023 (2)−0.013 (2)0.003 (2)
C110.049 (2)0.041 (2)0.051 (3)−0.016 (2)−0.011 (2)0.0079 (19)
C120.041 (2)0.049 (2)0.038 (2)−0.0166 (19)−0.0089 (17)0.0038 (18)
C130.042 (2)0.041 (2)0.044 (2)−0.0156 (18)−0.0107 (17)0.0020 (17)
C140.044 (2)0.049 (3)0.049 (2)−0.018 (2)−0.0126 (19)0.0054 (19)
C150.087 (4)0.084 (4)0.057 (3)−0.040 (3)−0.015 (3)0.005 (3)
C160.109 (6)0.178 (9)0.122 (7)−0.066 (7)0.029 (5)−0.069 (7)
C170.082 (4)0.075 (4)0.080 (4)−0.032 (3)−0.040 (3)0.017 (3)
C180.134 (7)0.086 (5)0.088 (5)−0.046 (5)−0.049 (5)−0.001 (4)
Co1—O12.088 (3)C7—C61.370 (6)
Co1—O1i2.088 (3)C7—H70.9300
Co1—O52.121 (3)C8—H811.04 (6)
Co1—O5i2.121 (3)C9—H90.9300
Co1—N12.163 (3)C10—C91.377 (6)
Co1—N1i2.163 (3)C10—C111.385 (6)
O1—C11.262 (5)C10—H100.9300
O2—C11.257 (5)C11—H110.9300
O3—C81.193 (7)C12—C111.385 (6)
O4—C141.219 (5)C12—C131.378 (6)
O5—H510.94 (4)C13—H130.9300
O5—H520.92 (2)C14—N21.330 (6)
N1—C91.341 (5)C14—C121.511 (6)
N1—C131.343 (5)C15—C161.476 (9)
N2—C151.473 (7)C15—H15A0.9700
N2—C171.501 (7)C15—H15B0.9700
C2—C11.504 (6)C16—H16A0.9600
C2—C31.391 (6)C16—H16B0.9600
C2—C71.392 (6)C16—H16C0.9600
C3—C41.371 (6)C17—C181.463 (8)
C3—H30.9300C17—H17A0.9700
C4—C51.394 (7)C17—H17B0.9700
C4—H40.9300C18—H18A0.9600
C5—C61.391 (6)C18—H18B0.9600
C5—C81.477 (7)C18—H18C0.9600
C6—H60.9300
O1i—Co1—O1180.00 (17)O3—C8—C5126.1 (6)
O1i—Co1—O5i88.16 (12)O3—C8—H81116 (3)
O1—Co1—O5i91.84 (12)C5—C8—H81117 (3)
O1i—Co1—O591.84 (12)N1—C9—C10123.3 (4)
O1—Co1—O588.16 (12)N1—C9—H9118.3
O1i—Co1—N191.25 (12)C10—C9—H9118.3
O1—Co1—N188.75 (12)C9—C10—C11118.5 (4)
O1i—Co1—N1i88.75 (12)C9—C10—H10120.7
O1—Co1—N1i91.25 (12)C11—C10—H10120.7
O5i—Co1—O5180.00 (18)C10—C11—H11120.6
O5i—Co1—N193.36 (12)C12—C11—C10118.8 (4)
O5—Co1—N186.64 (12)C12—C11—H11120.6
O5i—Co1—N1i86.64 (12)C11—C12—C14123.6 (4)
O5—Co1—N1i93.36 (12)C13—C12—C11119.1 (4)
N1—Co1—N1i180.0 (2)C13—C12—C14116.9 (4)
C1—O1—Co1127.5 (3)N1—C13—C12122.6 (4)
Co1—O5—H51119 (4)N1—C13—H13118.7
Co1—O5—H5297 (3)C12—C13—H13118.7
H52—O5—H51105 (3)O4—C14—N2122.1 (4)
C9—N1—Co1123.6 (3)O4—C14—C12117.9 (4)
C9—N1—C13117.7 (4)N2—C14—C12120.0 (4)
C13—N1—Co1118.6 (3)N2—C15—C16113.8 (6)
C14—N2—C15125.4 (4)N2—C15—H15A108.8
C14—N2—C17116.9 (4)N2—C15—H15B108.8
C15—N2—C17117.6 (4)C16—C15—H15A108.8
O1—C1—C2116.9 (4)C16—C15—H15B108.8
O2—C1—O1125.1 (4)H15A—C15—H15B107.7
O2—C1—C2118.0 (4)C15—C16—H16A109.5
C3—C2—C1120.0 (4)C15—C16—H16B109.5
C3—C2—C7118.7 (4)C15—C16—H16C109.5
C7—C2—C1121.3 (4)H16A—C16—H16B109.5
C2—C3—H3119.9H16A—C16—H16C109.5
C4—C3—C2120.3 (4)H16B—C16—H16C109.5
C4—C3—H3119.9N2—C17—H17A109.4
C3—C4—C5120.5 (4)N2—C17—H17B109.4
C3—C4—H4119.7C18—C17—N2111.3 (5)
C5—C4—H4119.7C18—C17—H17A109.4
C4—C5—C8119.7 (5)C18—C17—H17B109.4
C6—C5—C4119.5 (4)H17A—C17—H17B108.0
C6—C5—C8120.7 (5)C17—C18—H18A109.5
C5—C6—H6120.2C17—C18—H18B109.5
C7—C6—C5119.5 (4)C17—C18—H18C109.5
C7—C6—H6120.2H18A—C18—H18B109.5
C2—C7—H7119.3H18A—C18—H18C109.5
C6—C7—C2121.4 (4)H18B—C18—H18C109.5
C6—C7—H7119.3
O5i—Co1—O1—C1−11.3 (4)C1—C2—C3—C4179.5 (4)
O5—Co1—O1—C1168.7 (4)C7—C2—C3—C4−1.1 (7)
N1—Co1—O1—C182.0 (4)C1—C2—C7—C6−178.9 (4)
N1i—Co1—O1—C1−98.0 (4)C3—C2—C7—C61.8 (7)
O1i—Co1—N1—C933.5 (3)C2—C3—C4—C5−0.3 (7)
O1—Co1—N1—C9−146.5 (3)C3—C4—C5—C61.2 (8)
O1i—Co1—N1—C13−148.7 (3)C3—C4—C5—C8−179.0 (5)
O1—Co1—N1—C1331.3 (3)C4—C5—C6—C7−0.6 (8)
O5i—Co1—N1—C9−54.7 (3)C8—C5—C6—C7179.6 (5)
O5—Co1—N1—C9125.3 (3)C4—C5—C8—O3174.2 (7)
O5i—Co1—N1—C13123.0 (3)C6—C5—C8—O3−6.0 (10)
O5—Co1—N1—C13−57.0 (3)C2—C7—C6—C5−1.0 (7)
Co1—O1—C1—O227.6 (6)C11—C10—C9—N1−0.6 (7)
Co1—O1—C1—C2−151.1 (3)C9—C10—C11—C121.5 (7)
Co1—N1—C9—C10177.3 (3)C13—C12—C11—C10−1.2 (6)
C13—N1—C9—C10−0.5 (6)C14—C12—C11—C10171.5 (4)
Co1—N1—C13—C12−177.2 (3)C11—C12—C13—N10.1 (6)
C9—N1—C13—C120.7 (6)C14—C12—C13—N1−173.1 (4)
C14—N2—C15—C16109.8 (7)O4—C14—C12—C11−114.3 (5)
C17—N2—C15—C16−70.5 (8)O4—C14—C12—C1358.6 (6)
C14—N2—C17—C18−77.7 (7)N2—C14—C12—C1162.5 (6)
C15—N2—C17—C18102.6 (6)N2—C14—C12—C13−124.6 (5)
C3—C2—C1—O1175.2 (4)O4—C14—N2—C15−178.4 (5)
C3—C2—C1—O2−3.6 (6)O4—C14—N2—C171.9 (7)
C7—C2—C1—O1−4.1 (6)C12—C14—N2—C155.0 (8)
C7—C2—C1—O2177.1 (4)C12—C14—N2—C17−174.7 (4)
D—H···AD—HH···AD···AD—H···A
O5—H51···O4ii0.94 (4)1.86 (4)2.787 (5)174 (6)
O5—H52···O2i0.92 (2)1.73 (4)2.646 (5)168 (6)
Table 1

Selected bond lengths (Å)

Co1—O12.088 (3)
Co1—O52.121 (3)
Co1—N12.163 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H51⋯O4i0.94 (4)1.86 (4)2.787 (5)174 (6)
O5—H52⋯O2ii0.92 (2)1.73 (4)2.646 (5)168 (6)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)nickel(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

4.  Diaqua-bis(4-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)manganese(II).

Authors:  Tuncer Hökelek; Nagihan Caylak; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-29

5.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)manganese(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25
  5 in total
  9 in total

1.  Diaqua-bis(2-bromo-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

2.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN)bis[4-(dimethyl-amino)-benzoato-κO]cobalt(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; Ozgür Aybirdi; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-08

3.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

4.  Diaqua-bis(2-bromo-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-13

5.  Tetra-aqua-bis(isonicotinamide-κN)cobalt(II) bis-(4-formyl-benzoate) dihydrate.

Authors:  Tuncer Hökelek; Filiz Yılmaz; Barış Tercan; Mustafa Sertçelik; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-26

6.  trans-Tetra-aqua-bis-(isonicotinamide-κN)cobalt(II) bis-(3-hy-droxy-benzoate) tetra-hydrate.

Authors:  Iibrahim Göker Zaman; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

7.  trans-Tetra-aqua-bis-(isonicotinamide-κN)nickel(II) bis-(3-hy-droxy-benzoate) tetra-hydrate.

Authors:  Ibrahim Göker Zaman; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-21

8.  trans-Tetra-aqua-bis-(isonicotinamide-κN (1))zinc bis-(3-hy-droxy-benzoate) tetra-hydrate.

Authors:  Ibrahim Göker Zaman; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-03-13

9.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))zinc.

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.