Literature DB >> 23476513

Diaqua-bis-(2-chloro-benzoato-κO)bis-(nicotinamide-κN (1))cobalt(II).

Oznur Dincel1, Barış Tercan, Füreya Elif Oztürkkan, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the title complex, [Co(C7H4ClO2)2(C6H6N2O)2(H2O)2], the Co(II) cation is located on an inversion center and is coord-inated by two 2-chloro-benzoate anions, two nicotin-amide (NA) ligands and two water mol-ecules. The four O atoms in the equatorial plane around the Co(II) cation form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two pyridine N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 29.7 (4)°, while the pyridine and benzene rings are oriented at a dihedral angle of 83.17 (15)°. Intra-molecular O-H⋯O hydrogen bonding occurs between the carboxyl-ate group and coordinating water mol-ecule. In the crystal, inter-molecular N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2013        PMID: 23476513      PMCID: PMC3588457          DOI: 10.1107/S1600536813004984

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to niacin, see: Krishnamachari (1974 ▶). For information on the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Hökelek et al. (1996 ▶, 2009 ▶); Hökelek & Necefoğlu (1998 ▶, 2007 ▶); Necefoğlu et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Co(C7H4ClO2)2(C6H6N2O)2(H2O)2] M = 650.32 Monoclinic, a = 7.8679 (2) Å b = 17.9522 (3) Å c = 9.8492 (2) Å β = 106.637 (3)° V = 1332.92 (5) Å3 Z = 2 Mo Kα radiation μ = 0.90 mm−1 T = 100 K 0.39 × 0.33 × 0.23 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.708, T max = 0.811 10778 measured reflections 3285 independent reflections 2366 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.088 wR(F 2) = 0.237 S = 1.23 3285 reflections 202 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.42 e Å−3 Δρmin = −1.61 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813004984/xu5678sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813004984/xu5678Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H4ClO2)2(C6H6N2O)2(H2O)2]F(000) = 666
Mr = 650.32Dx = 1.620 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4735 reflections
a = 7.8679 (2) Åθ = 2.4–27.9°
b = 17.9522 (3) ŵ = 0.90 mm1
c = 9.8492 (2) ÅT = 100 K
β = 106.637 (3)°Block, pink
V = 1332.92 (5) Å30.39 × 0.33 × 0.23 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer3285 independent reflections
Radiation source: fine-focus sealed tube2366 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.061
φ and ω scansθmax = 28.3°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −6→10
Tmin = 0.708, Tmax = 0.811k = −23→18
10778 measured reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.088Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.237H atoms treated by a mixture of independent and constrained refinement
S = 1.23w = 1/[σ2(Fo2) + (0.0784P)2 + 7.9389P] where P = (Fo2 + 2Fc2)/3
3285 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 1.42 e Å3
0 restraintsΔρmin = −1.61 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.00000.00000.0169 (3)
Cl1−0.0922 (2)0.28811 (9)−0.32577 (17)0.0282 (4)
O1−0.1130 (5)0.1367 (2)−0.2254 (4)0.0223 (9)
O20.1155 (5)0.0988 (2)−0.0461 (4)0.0192 (8)
O3−0.4515 (5)0.0095 (3)0.3249 (4)0.0250 (10)
O4−0.2634 (6)0.0436 (3)−0.0890 (4)0.0211 (9)
H41−0.329 (12)0.014 (5)−0.133 (10)0.04 (3)*
H42−0.241 (11)0.084 (5)−0.146 (9)0.05 (2)*
N1−0.0041 (6)0.0446 (3)0.1993 (5)0.0175 (10)
N2−0.3567 (7)0.0816 (3)0.5201 (5)0.0244 (12)
H21−0.282 (12)0.108 (5)0.573 (10)0.05 (3)*
H22−0.457 (8)0.071 (3)0.543 (7)0.013 (15)*
C10.0477 (7)0.1383 (3)−0.1558 (6)0.0180 (11)
C20.1707 (8)0.1857 (3)−0.2106 (6)0.0188 (11)
C30.1181 (8)0.2488 (3)−0.2961 (6)0.0196 (11)
C40.2310 (8)0.2848 (4)−0.3596 (6)0.0214 (12)
H40.19190.3263−0.41660.026*
C50.4023 (8)0.2589 (4)−0.3380 (6)0.0236 (12)
H50.47740.2818−0.38300.028*
C60.4619 (8)0.1984 (4)−0.2485 (6)0.0233 (12)
H60.57840.1821−0.23030.028*
C70.3468 (8)0.1629 (4)−0.1870 (6)0.0207 (12)
H70.38790.1224−0.12780.025*
C8−0.1512 (7)0.0371 (3)0.2405 (5)0.0179 (11)
H8−0.24690.01130.18190.021*
C9−0.1672 (7)0.0661 (3)0.3663 (5)0.0173 (11)
C10−0.0260 (8)0.1057 (3)0.4526 (6)0.0211 (12)
H10−0.03390.12670.53690.025*
C110.1259 (8)0.1134 (4)0.4115 (6)0.0227 (12)
H110.22250.13950.46800.027*
C120.1337 (7)0.0817 (3)0.2846 (5)0.0189 (11)
H120.23750.08630.25810.023*
C13−0.3372 (7)0.0508 (3)0.4019 (6)0.0188 (12)
U11U22U33U12U13U23
Co10.0160 (5)0.0304 (6)0.0024 (4)−0.0006 (4)0.000−0.0003 (4)
Cl10.0217 (7)0.0377 (9)0.0220 (8)0.0073 (6)0.0009 (6)0.0057 (6)
O10.019 (2)0.039 (3)0.0062 (18)−0.0013 (17)−0.0009 (15)0.0015 (17)
O20.0159 (19)0.035 (2)0.0026 (17)−0.0021 (16)−0.0033 (15)0.0011 (15)
O30.019 (2)0.047 (3)0.0072 (18)−0.0064 (18)0.0008 (15)−0.0044 (18)
O40.020 (2)0.034 (3)0.0059 (19)−0.0020 (18)−0.0014 (16)−0.0009 (18)
N10.018 (2)0.029 (3)0.004 (2)−0.0013 (19)−0.0005 (17)−0.0005 (18)
N20.019 (3)0.049 (4)0.007 (2)−0.007 (2)0.007 (2)−0.006 (2)
C10.017 (2)0.027 (3)0.007 (2)−0.001 (2)−0.001 (2)−0.003 (2)
C20.020 (3)0.029 (3)0.004 (2)−0.004 (2)−0.001 (2)−0.003 (2)
C30.018 (3)0.031 (3)0.007 (2)0.001 (2)−0.001 (2)−0.004 (2)
C40.021 (3)0.032 (3)0.007 (3)−0.003 (2)−0.002 (2)−0.001 (2)
C50.024 (3)0.038 (3)0.008 (3)−0.007 (3)0.004 (2)−0.002 (2)
C60.019 (3)0.034 (3)0.015 (3)−0.002 (2)0.001 (2)−0.004 (2)
C70.018 (3)0.031 (3)0.008 (2)−0.002 (2)−0.004 (2)−0.002 (2)
C80.016 (3)0.030 (3)0.004 (2)−0.002 (2)−0.002 (2)−0.002 (2)
C90.014 (2)0.030 (3)0.006 (2)0.002 (2)0.001 (2)0.002 (2)
C100.023 (3)0.032 (3)0.006 (2)−0.003 (2)0.001 (2)−0.004 (2)
C110.018 (3)0.036 (3)0.008 (3)−0.003 (2)−0.006 (2)−0.005 (2)
C120.015 (3)0.035 (3)0.005 (2)0.000 (2)0.000 (2)0.002 (2)
C130.013 (2)0.036 (3)0.006 (2)0.000 (2)0.000 (2)0.001 (2)
Co1—N12.129 (4)C2—C71.399 (8)
Co1—N1i2.129 (4)C3—C41.384 (8)
Co1—O22.102 (4)C4—C51.383 (8)
Co1—O2i2.102 (4)C4—H40.9300
Co1—O42.153 (4)C5—H50.9300
Co1—O4i2.153 (4)C6—C51.392 (9)
Cl1—C31.744 (6)C6—H60.9300
O1—C11.254 (7)C7—C61.381 (8)
O2—C11.273 (7)C7—H70.9300
O3—C131.243 (7)C8—H80.9300
O4—H410.78 (9)C9—C81.382 (7)
O4—H420.96 (9)C9—C101.386 (8)
N1—C81.339 (7)C9—C131.502 (7)
N1—C121.343 (7)C10—C111.374 (8)
N2—C131.337 (7)C10—H100.9300
N2—H210.81 (9)C11—H110.9300
N2—H220.90 (6)C12—C111.390 (8)
C1—C21.501 (8)C12—H120.9300
C2—C31.402 (8)
O2—Co1—O2i180.0 (2)C4—C3—C2122.1 (5)
O2—Co1—O491.75 (17)C4—C3—Cl1115.9 (5)
O2i—Co1—O488.25 (17)C3—C4—H4120.1
O2—Co1—O4i88.25 (17)C5—C4—C3119.8 (6)
O2i—Co1—O4i91.75 (17)C5—C4—H4120.1
O2—Co1—N190.19 (16)C4—C5—C6119.7 (5)
O2i—Co1—N189.81 (16)C4—C5—H5120.1
O2—Co1—N1i89.81 (16)C6—C5—H5120.1
O2i—Co1—N1i90.19 (16)C5—C6—H6120.2
O4—Co1—O4i180.0 (2)C7—C6—C5119.6 (6)
N1—Co1—O488.39 (17)C7—C6—H6120.2
N1i—Co1—N1180.0 (3)C2—C7—H7118.8
N1i—Co1—O491.61 (17)C6—C7—C2122.3 (6)
N1—Co1—O4i91.61 (17)C6—C7—H7118.8
N1i—Co1—O4i88.39 (17)N1—C8—C9122.8 (5)
C1—O2—Co1123.4 (4)N1—C8—H8118.6
Co1—O4—H41113 (6)C9—C8—H8118.6
Co1—O4—H42101 (5)C8—C9—C10118.7 (5)
H41—O4—H42113 (8)C8—C9—C13117.1 (5)
C8—N1—Co1119.0 (4)C10—C9—C13124.1 (5)
C8—N1—C12118.3 (5)C9—C10—H10120.6
C12—N1—Co1122.8 (4)C11—C10—C9118.9 (5)
C13—N2—H21124 (6)C11—C10—H10120.6
C13—N2—H22117 (4)C10—C11—C12119.3 (5)
H22—N2—H21119 (7)C10—C11—H11120.4
O1—C1—O2124.2 (5)C12—C11—H11120.4
O1—C1—C2118.0 (5)N1—C12—C11122.0 (5)
O2—C1—C2117.6 (5)N1—C12—H12119.0
C3—C2—C1124.4 (5)C11—C12—H12119.0
C7—C2—C1119.0 (5)O3—C13—N2122.3 (5)
C7—C2—C3116.4 (5)O3—C13—C9120.2 (5)
C2—C3—Cl1122.0 (4)N2—C13—C9117.4 (5)
O4—Co1—O2—C1−34.9 (4)C1—C2—C3—Cl110.4 (8)
O4i—Co1—O2—C1145.1 (4)C1—C2—C3—C4−171.1 (5)
N1—Co1—O2—C1−123.3 (4)C7—C2—C3—Cl1−175.5 (4)
N1i—Co1—O2—C156.7 (4)C7—C2—C3—C43.0 (8)
O2—Co1—N1—C8134.5 (4)C1—C2—C7—C6171.9 (5)
O2i—Co1—N1—C8−45.5 (4)C3—C2—C7—C6−2.5 (8)
O2—Co1—N1—C12−43.9 (4)Cl1—C3—C4—C5177.9 (4)
O2i—Co1—N1—C12136.1 (4)C2—C3—C4—C5−0.7 (9)
O4—Co1—N1—C842.8 (4)C3—C4—C5—C6−2.3 (9)
O4i—Co1—N1—C8−137.2 (4)C7—C6—C5—C42.7 (9)
O4—Co1—N1—C12−135.6 (5)C2—C7—C6—C5−0.3 (9)
O4i—Co1—N1—C1244.4 (5)C10—C9—C8—N11.1 (9)
Co1—O2—C1—O121.7 (8)C13—C9—C8—N1−177.6 (5)
Co1—O2—C1—C2−154.0 (4)C8—C9—C10—C11−1.3 (9)
Co1—N1—C8—C9−178.2 (4)C13—C9—C10—C11177.2 (6)
C12—N1—C8—C90.3 (9)C8—C9—C13—O34.8 (8)
Co1—N1—C12—C11177.0 (4)C8—C9—C13—N2−176.9 (6)
C8—N1—C12—C11−1.4 (8)C10—C9—C13—O3−173.8 (6)
O1—C1—C2—C326.3 (8)C10—C9—C13—N24.5 (9)
O1—C1—C2—C7−147.6 (5)C9—C10—C11—C120.3 (9)
O2—C1—C2—C3−157.8 (5)N1—C12—C11—C101.1 (9)
O2—C1—C2—C728.3 (8)
D—H···AD—HH···AD···AD—H···A
N2—H21···O1ii0.82 (10)2.11 (9)2.861 (6)152 (9)
N2—H22···O3iii0.90 (7)2.20 (6)2.932 (7)138 (5)
O4—H41···O3iv0.78 (9)2.20 (10)2.890 (6)147 (10)
O4—H42···O10.96 (9)1.72 (9)2.628 (7)155 (8)
C6—H6···O1v0.932.553.468 (8)170
C10—H10···O1ii0.932.603.476 (7)158
Table 1

Selected bond lengths (Å)

Co1—N12.129 (4)
Co1—O22.102 (4)
Co1—O42.153 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H21⋯O1i 0.82 (10)2.11 (9)2.861 (6)152 (9)
N2—H22⋯O3ii 0.90 (7)2.20 (6)2.932 (7)138 (5)
O4—H41⋯O3iii 0.78 (9)2.20 (10)2.890 (6)147 (10)
O4—H42⋯O10.96 (9)1.72 (9)2.628 (7)155 (8)
C6—H6⋯O1iv 0.932.553.468 (8)170
C10—H10⋯O1i 0.932.603.476 (7)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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