Literature DB >> 23795008

Di-aqua-bis-(3-chloro-benzoato-κO)bis-(nicotinamide-κN (1))cobalt(II).

Nihat Bozkurt1, Nefise Dilek, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the title complex, [Co(C7H4ClO2)2(C6H6N2O)2(H2O)2], the Co(II) atom is located on an inversion center and is coordinated by two 3-chloro-benzoate (CB) anions, two nicotinamide (NA) ligands and two water mol-ecules. The four O atoms in the equatorial plane form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 9.14 (9)°, while the pyridine and benzene rings are oriented at a dihedral angle of 82.18 (8)°. In the crystal, N-H⋯O and O-H⋯O hydrogen bonds link the mol-ecules into a two-dimensional network lying parallel to (101). π-π stacking between parallel pyridine rings of adjacent mol-ecules [centroid-centroid distance = 3.7765 (8) Å] further stabilizes the crystal structure.

Entities:  

Year:  2013        PMID: 23795008      PMCID: PMC3684906          DOI: 10.1107/S160053681301458X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on niacin, see: Krishnamachari (1974 ▶). For information on the nicotinic acid derivative N,N-di­ethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Aydın et al. (2012 ▶); Hökelek et al. (1996 ▶, 2009a ▶,b ▶); Hökelek & Necefoğlu (1998 ▶, 2007 ▶); Necefoğlu et al. (2011a ▶,b ▶); Sertçelik et al. (2012a ▶,b ▶,c ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Co(C7H4ClO2)2(C6H6N2O)2(H2O)2] M = 650.32 Monoclinic, a = 11.5181 (3) Å b = 8.8191 (2) Å c = 13.5089 (3) Å β = 90.546 (2)° V = 1372.16 (6) Å3 Z = 2 Mo Kα radiation μ = 0.88 mm−1 T = 294 K 0.35 × 0.22 × 0.18 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▶) T min = 0.793, T max = 0.854 18960 measured reflections 2797 independent reflections 2667 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.074 S = 1.11 2797 reflections 204 parameters 52 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681301458X/su2606sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301458X/su2606Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C7H4ClO2)2(C6H6N2O)2(H2O)2]F(000) = 666
Mr = 650.32Dx = 1.574 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4857 reflections
a = 11.5181 (3) Åθ = 2.3–24.4°
b = 8.8191 (2) ŵ = 0.88 mm1
c = 13.5089 (3) ÅT = 294 K
β = 90.546 (2)°Block, pink
V = 1372.16 (6) Å30.35 × 0.22 × 0.18 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer2797 independent reflections
Radiation source: fine-focus sealed tube2667 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 26.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2012)h = −14→14
Tmin = 0.793, Tmax = 0.854k = −11→10
18960 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.074w = 1/[σ2(Fo2) + (0.0393P)2 + 0.5258P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max = 0.001
2797 reflectionsΔρmax = 0.32 e Å3
204 parametersΔρmin = −0.33 e Å3
52 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0334 (17)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.000001.000001.000000.0221 (1)
Cl10.57400 (4)0.77742 (8)0.87425 (3)0.0604 (2)
O10.17264 (10)0.87980 (18)1.18080 (9)0.0518 (4)
O20.17291 (8)0.94984 (12)1.02212 (8)0.0299 (3)
O30.16810 (10)0.34420 (12)0.81282 (10)0.0415 (4)
O40.04558 (10)1.07995 (12)0.85606 (8)0.0298 (3)
N1−0.02319 (10)0.77771 (13)0.93492 (9)0.0258 (3)
N20.23334 (16)0.56716 (18)0.76095 (16)0.0592 (6)
C10.21833 (12)0.88839 (17)1.09796 (11)0.0293 (4)
C20.33518 (12)0.81535 (17)1.08465 (11)0.0286 (4)
C30.39495 (13)0.83285 (18)0.99657 (11)0.0316 (4)
C40.49988 (13)0.7599 (2)0.98487 (12)0.0368 (5)
C50.54679 (15)0.6700 (2)1.05879 (14)0.0464 (6)
C60.48691 (17)0.6533 (2)1.14586 (14)0.0496 (6)
C70.38168 (15)0.7255 (2)1.15907 (12)0.0388 (5)
C80.06524 (12)0.70512 (15)0.89207 (11)0.0268 (4)
C90.05526 (12)0.56102 (15)0.85229 (10)0.0258 (4)
C10−0.05151 (14)0.48869 (16)0.85705 (12)0.0314 (4)
C11−0.14353 (13)0.56408 (18)0.89921 (13)0.0356 (5)
C12−0.12591 (12)0.70790 (16)0.93721 (11)0.0303 (4)
C130.15664 (14)0.48213 (16)0.80673 (12)0.0304 (4)
H30.364600.893000.946100.0380*
H50.617700.621601.049900.0560*
H60.517500.592901.196200.0590*
H70.342000.713601.218200.0470*
H80.136700.753800.888900.0320*
H10−0.060900.391000.832200.0380*
H11−0.216400.518900.902000.0430*
H12−0.188300.758100.965600.0360*
H210.221 (2)0.659 (3)0.7492 (19)0.066 (7)*
H220.293 (2)0.526 (3)0.7323 (19)0.063 (7)*
H41−0.028 (2)1.098 (3)0.8311 (18)0.069 (7)*
H420.079 (2)1.163 (3)0.8530 (17)0.055 (6)*
U11U22U33U12U13U23
Co10.0201 (2)0.0183 (2)0.0280 (2)0.0011 (1)0.0066 (1)−0.0026 (1)
Cl10.0389 (2)0.1013 (4)0.0412 (3)0.0171 (2)0.0140 (2)0.0029 (2)
O10.0339 (6)0.0875 (10)0.0342 (6)0.0108 (6)0.0090 (5)0.0038 (6)
O20.0230 (5)0.0306 (5)0.0362 (5)0.0039 (4)0.0044 (4)0.0007 (4)
O30.0403 (6)0.0194 (5)0.0651 (8)0.0024 (4)0.0211 (5)−0.0007 (5)
O40.0297 (5)0.0267 (6)0.0332 (5)−0.0023 (4)0.0098 (4)−0.0001 (4)
N10.0256 (6)0.0205 (5)0.0313 (6)0.0005 (4)0.0049 (5)−0.0027 (4)
N20.0569 (10)0.0231 (7)0.0985 (14)0.0036 (7)0.0507 (10)0.0049 (8)
C10.0247 (7)0.0308 (7)0.0324 (7)−0.0020 (5)0.0034 (5)−0.0042 (6)
C20.0261 (7)0.0297 (7)0.0301 (7)0.0001 (6)−0.0001 (5)−0.0025 (6)
C30.0273 (7)0.0369 (8)0.0307 (7)0.0051 (6)0.0000 (6)0.0031 (6)
C40.0286 (7)0.0489 (10)0.0331 (8)0.0054 (6)0.0038 (6)−0.0028 (7)
C50.0344 (8)0.0564 (11)0.0482 (10)0.0200 (8)−0.0027 (7)0.0004 (8)
C60.0479 (10)0.0572 (11)0.0435 (10)0.0165 (9)−0.0075 (8)0.0127 (8)
C70.0401 (9)0.0459 (9)0.0303 (8)0.0038 (7)0.0005 (6)0.0045 (7)
C80.0251 (6)0.0214 (6)0.0339 (7)−0.0006 (5)0.0068 (5)−0.0010 (5)
C90.0292 (7)0.0197 (6)0.0287 (7)0.0017 (5)0.0063 (5)0.0004 (5)
C100.0336 (8)0.0220 (7)0.0388 (8)−0.0030 (5)0.0051 (6)−0.0062 (5)
C110.0270 (7)0.0312 (8)0.0486 (9)−0.0058 (6)0.0062 (6)−0.0072 (7)
C120.0249 (7)0.0276 (7)0.0384 (8)0.0010 (5)0.0073 (6)−0.0032 (6)
C130.0320 (8)0.0211 (7)0.0382 (8)0.0000 (5)0.0112 (6)−0.0025 (6)
Co1—O22.0592 (9)C2—C31.389 (2)
Co1—O42.1385 (11)C3—C41.380 (2)
Co1—N12.1640 (12)C4—C51.381 (2)
Co1—O2i2.0592 (9)C5—C61.377 (3)
Co1—O4i2.1385 (11)C6—C71.382 (3)
Co1—N1i2.1640 (12)C8—C91.3841 (19)
Cl1—C41.7350 (16)C9—C131.497 (2)
O1—C11.2435 (19)C9—C101.387 (2)
O2—C11.2676 (18)C10—C111.379 (2)
O3—C131.2262 (18)C11—C121.383 (2)
O4—H410.92 (2)C3—H30.9300
O4—H420.83 (3)C5—H50.9300
N1—C121.3344 (18)C6—H60.9300
N1—C81.3392 (18)C7—H70.9300
N2—C131.317 (2)C8—H80.9300
N2—H210.84 (3)C10—H100.9300
N2—H220.87 (2)C11—H110.9300
C1—C21.504 (2)C12—H120.9300
C2—C71.384 (2)
O2—Co1—O487.55 (4)Cl1—C4—C3119.73 (12)
O2—Co1—N188.84 (4)C3—C4—C5121.47 (15)
O2—Co1—O2i180.00Cl1—C4—C5118.79 (13)
O2—Co1—O4i92.45 (4)C4—C5—C6118.90 (16)
O2—Co1—N1i91.16 (4)C5—C6—C7120.53 (17)
O4—Co1—N187.69 (4)C2—C7—C6120.25 (15)
O2i—Co1—O492.45 (4)N1—C8—C9123.09 (13)
O4—Co1—O4i180.00C8—C9—C13121.62 (13)
O4—Co1—N1i92.31 (4)C8—C9—C10118.33 (13)
O2i—Co1—N191.16 (4)C10—C9—C13120.05 (12)
O4i—Co1—N192.31 (4)C9—C10—C11118.86 (13)
N1—Co1—N1i180.00C10—C11—C12119.01 (14)
O2i—Co1—O4i87.55 (4)N1—C12—C11122.80 (13)
O2i—Co1—N1i88.84 (4)N2—C13—C9117.24 (13)
O4i—Co1—N1i87.69 (4)O3—C13—N2121.59 (16)
Co1—O2—C1126.89 (9)O3—C13—C9121.16 (14)
H41—O4—H42105 (2)C2—C3—H3120.00
Co1—O4—H4199.0 (15)C4—C3—H3120.00
Co1—O4—H42117.1 (16)C4—C5—H5121.00
Co1—N1—C8121.14 (9)C6—C5—H5121.00
Co1—N1—C12120.97 (9)C5—C6—H6120.00
C8—N1—C12117.88 (12)C7—C6—H6120.00
H21—N2—H22117 (2)C2—C7—H7120.00
C13—N2—H21121.8 (16)C6—C7—H7120.00
C13—N2—H22120.5 (17)N1—C8—H8118.00
O1—C1—O2125.34 (14)C9—C8—H8118.00
O1—C1—C2117.92 (13)C9—C10—H10121.00
O2—C1—C2116.70 (13)C11—C10—H10121.00
C1—C2—C3120.41 (13)C10—C11—H11121.00
C1—C2—C7119.92 (13)C12—C11—H11120.00
C3—C2—C7119.63 (14)N1—C12—H12119.00
C2—C3—C4119.23 (14)C11—C12—H12119.00
O4—Co1—O2—C1−177.85 (12)O2—C1—C2—C7−169.65 (14)
N1—Co1—O2—C1−90.11 (12)C1—C2—C3—C4−177.53 (14)
O4i—Co1—O2—C12.15 (12)C7—C2—C3—C40.1 (2)
N1i—Co1—O2—C189.89 (12)C1—C2—C7—C6177.50 (15)
O2—Co1—N1—C8−26.16 (11)C3—C2—C7—C6−0.1 (2)
O2—Co1—N1—C12153.10 (11)C2—C3—C4—Cl1178.62 (12)
O4—Co1—N1—C861.44 (11)C2—C3—C4—C50.0 (2)
O4—Co1—N1—C12−119.31 (11)Cl1—C4—C5—C6−178.62 (14)
O2i—Co1—N1—C8153.84 (11)C3—C4—C5—C60.1 (3)
O2i—Co1—N1—C12−26.90 (11)C4—C5—C6—C7−0.1 (3)
O4i—Co1—N1—C8−118.56 (11)C5—C6—C7—C20.1 (3)
O4i—Co1—N1—C1260.69 (11)N1—C8—C9—C100.1 (2)
Co1—O2—C1—O1−18.0 (2)N1—C8—C9—C13−178.77 (13)
Co1—O2—C1—C2159.69 (10)C8—C9—C10—C111.3 (2)
Co1—N1—C8—C9177.93 (11)C13—C9—C10—C11−179.86 (14)
C12—N1—C8—C9−1.4 (2)C8—C9—C13—O3146.12 (16)
Co1—N1—C12—C11−177.98 (12)C8—C9—C13—N2−33.2 (2)
C8—N1—C12—C111.3 (2)C10—C9—C13—O3−32.7 (2)
O1—C1—C2—C3−174.24 (15)C10—C9—C13—N2148.03 (17)
O1—C1—C2—C78.2 (2)C9—C10—C11—C12−1.3 (2)
O2—C1—C2—C37.9 (2)C10—C11—C12—N10.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H21···O3ii0.84 (3)2.24 (3)2.876 (2)133 (2)
N2—H22···O4iii0.87 (2)2.27 (2)3.012 (2)143 (2)
O4—H41···O1i0.92 (2)1.68 (2)2.5822 (16)164 (2)
O4—H42···O3iv0.83 (3)1.98 (3)2.7892 (15)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H21⋯O3i 0.84 (3)2.24 (3)2.876 (2)133 (2)
N2—H22⋯O4ii 0.87 (2)2.27 (2)3.012 (2)143 (2)
O4—H41⋯O1iii 0.92 (2)1.68 (2)2.5822 (16)164 (2)
O4—H42⋯O3iv 0.83 (3)1.98 (3)2.7892 (15)166 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  11 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Some aspects of copper metabolism in pellagra.

Authors:  K A Krishnamachari
Journal:  Am J Clin Nutr       Date:  1974-02       Impact factor: 7.045

3.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN)bis-(4-ethyl-benzoato-κO)cobalt(II).

Authors:  Hacali Necefoğlu; Ali Maracı; Füreya Elif Ozbek; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-22

4.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

5.  Diaqua-bis-(4-bromo-benzoato-κO)bis-(nicotinamide-κN)copper(II).

Authors:  Hacali Necefoğlu; Füreya Elif Ozbek; Vijdan Oztürk; Barış Tercan; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-11

6.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))nickel(II).

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-20

7.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN(1))bis-(4-formyl-benzoato-κO(1))zinc.

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-14

8.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))cobalt(II).

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-18

9.  Diaqua-bis-(2-iodo-benzoato-κO)bis-(nicotinamide-κN(1))cobalt(II).

Authors:  Omür Aydın; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-31

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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