Literature DB >> 21579062

Tetra-aqua-bis[4-(methyl-amino)benzoato-κO]nickel(II).

Hacali Necefoğlu, Ozgür Aybirdi, Barış Tercan, Yasemin Süzen, Tuncer Hökelek.   

Abstract

The title complex, [Ni(C(8)H(8)NO(2))(2)(H(2)O)(4)], is centrosymmetric with the Ni(II) ion located on a centre of symmetry. It contains two 4-(methyl-amino)benzoate (PMAB) anions and four coordinated water mol-ecules. The four O atoms in the equatorial plane around the Ni(II) ion form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by two O atoms of the PMAB anions in the axial positions. In the crystal structure, inter-molecular O-H⋯O, O-H⋯N, N-H⋯O and C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21579062      PMCID: PMC2979289          DOI: 10.1107/S1600536810014807

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structure–function–coordination relationships of the aryl­carboxyl­ate ion in transition-metal complexes of benzoic acid derivatives, see: Nadzhafov et al. (1981 ▶); Shnulin et al. (1981 ▶). For studies of transition-metal complexes with biochemical model systems, see: Antolini et al. (1982 ▶). For the coordination modes of benzoic acid derivatives, see: Chen & Chen (2002 ▶); Amiraslanov et al. (1979 ▶); Hauptmann et al. (2000 ▶). For related structures, see: Hökelek et al. (2009a ▶,b ▶); Necefoğlu et al. (2010 ▶); Sertçelik et al. (2009 ▶).

Experimental

Crystal data

[Ni(C8H8NO2)2(H2O)4] M = 431.06 Monoclinic, a = 7.5466 (2) Å b = 6.1811 (2) Å c = 19.4802 (3) Å β = 98.628 (3)° V = 898.40 (4) Å3 Z = 2 Mo Kα radiation μ = 1.13 mm−1 T = 100 K 0.35 × 0.25 × 0.13 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.718, T max = 0.863 8475 measured reflections 2242 independent reflections 2085 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.061 S = 1.06 2242 reflections 145 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810014807/ci5081sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014807/ci5081Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C8H8NO2)2(H2O)4]F(000) = 452
Mr = 431.06Dx = 1.594 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5176 reflections
a = 7.5466 (2) Åθ = 2.7–28.4°
b = 6.1811 (2) ŵ = 1.13 mm1
c = 19.4802 (3) ÅT = 100 K
β = 98.628 (3)°Block, green
V = 898.40 (4) Å30.35 × 0.25 × 0.13 mm
Z = 2
Bruker Kappa APEXII CCD area-detector diffractometer2242 independent reflections
Radiation source: fine-focus sealed tube2085 reflections with I > 2σ(I)
graphiteRint = 0.019
φ and ω scansθmax = 28.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→10
Tmin = 0.718, Tmax = 0.863k = −8→8
8475 measured reflectionsl = −25→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.061H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.032P)2 + 0.3955P] where P = (Fo2 + 2Fc2)/3
2242 reflections(Δ/σ)max = 0.001
145 parametersΔρmax = 0.41 e Å3
6 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.00000.50000.00000.01094 (9)
O10.12315 (14)0.95272 (17)0.08266 (5)0.0166 (2)
O2−0.00352 (13)0.63206 (17)0.09653 (5)0.0153 (2)
O30.23373 (13)0.34113 (17)0.03994 (5)0.0150 (2)
H310.327 (2)0.418 (3)0.0632 (10)0.031 (5)*
H320.220 (3)0.227 (3)0.0651 (11)0.044 (7)*
O4−0.15665 (13)0.25462 (17)0.03223 (5)0.0146 (2)
H41−0.163 (4)0.167 (4)−0.0089 (11)0.070 (9)*
H42−0.090 (3)0.178 (4)0.0679 (10)0.046 (7)*
N1−0.05050 (17)1.0577 (2)0.39282 (6)0.0155 (2)
H1−0.133 (3)0.984 (3)0.4069 (11)0.022 (5)*
C10.04946 (17)0.8156 (2)0.11841 (7)0.0130 (3)
C20.02308 (17)0.8804 (2)0.19011 (7)0.0126 (3)
C3−0.05536 (18)0.7378 (2)0.23236 (7)0.0149 (3)
H3−0.09020.60070.21590.018*
C4−0.08175 (18)0.7983 (2)0.29847 (7)0.0156 (3)
H4−0.13420.70150.32600.019*
C5−0.03016 (18)1.0039 (2)0.32435 (7)0.0137 (3)
C60.04875 (18)1.1470 (2)0.28224 (7)0.0147 (3)
H60.08401.28400.29870.018*
C70.07450 (18)1.0852 (2)0.21607 (7)0.0142 (3)
H70.12691.18170.18850.017*
C8−0.0564 (2)1.2874 (3)0.41124 (7)0.0182 (3)
H8A−0.08381.30090.45760.027*
H8B−0.14731.35890.37950.027*
H8C0.05781.35260.40870.027*
U11U22U33U12U13U23
Ni10.01233 (13)0.00929 (13)0.01089 (13)−0.00098 (9)0.00076 (9)0.00030 (8)
O10.0221 (5)0.0123 (5)0.0157 (5)−0.0032 (4)0.0035 (4)0.0001 (4)
O20.0192 (5)0.0124 (5)0.0140 (4)−0.0025 (4)0.0015 (4)−0.0013 (4)
O30.0151 (5)0.0128 (5)0.0163 (5)−0.0011 (4)−0.0001 (4)0.0012 (4)
O40.0162 (5)0.0130 (5)0.0144 (4)−0.0015 (4)0.0011 (4)0.0005 (4)
N10.0159 (6)0.0170 (6)0.0143 (5)−0.0006 (5)0.0043 (4)0.0006 (5)
C10.0118 (6)0.0125 (6)0.0138 (6)0.0023 (5)−0.0009 (4)0.0013 (5)
C20.0115 (5)0.0122 (6)0.0134 (6)0.0004 (5)−0.0003 (4)−0.0003 (5)
C30.0145 (6)0.0122 (6)0.0171 (6)−0.0014 (5)−0.0002 (5)−0.0003 (5)
C40.0159 (6)0.0151 (7)0.0160 (6)−0.0013 (5)0.0026 (5)0.0033 (5)
C50.0107 (6)0.0158 (7)0.0141 (6)0.0021 (5)0.0001 (5)0.0008 (5)
C60.0143 (6)0.0132 (6)0.0163 (6)−0.0014 (5)0.0017 (5)−0.0014 (5)
C70.0142 (6)0.0134 (7)0.0151 (6)−0.0013 (5)0.0021 (5)0.0005 (5)
C80.0196 (6)0.0185 (7)0.0172 (6)−0.0005 (6)0.0055 (5)−0.0018 (5)
Ni1—O22.0537 (10)C2—C31.3969 (19)
Ni1—O2i2.0537 (10)C3—H30.93
Ni1—O32.0662 (10)C4—C31.3839 (19)
Ni1—O3i2.0662 (10)C4—C51.401 (2)
Ni1—O42.0772 (10)C4—H40.93
Ni1—O4i2.0772 (10)C6—C51.3987 (19)
O1—C11.2761 (17)C6—H60.93
O2—C11.2561 (18)C7—C21.396 (2)
O3—H310.909 (16)C7—C61.3858 (19)
O3—H320.873 (17)C7—H70.93
O4—H410.964 (17)C8—N11.466 (2)
O4—H420.926 (17)C8—H8A0.96
N1—C51.4052 (18)C8—H8B0.96
N1—H10.85 (2)C8—H8C0.96
C2—C11.4948 (18)
O2—Ni1—O388.38 (4)O2—C1—O1123.87 (13)
O2i—Ni1—O391.62 (4)O2—C1—C2118.61 (12)
O2—Ni1—O2i180.00 (2)C3—C2—C1120.60 (13)
O2—Ni1—O3i91.62 (4)C7—C2—C1120.83 (12)
O2i—Ni1—O3i88.38 (4)C7—C2—C3118.57 (12)
O2—Ni1—O485.83 (4)C2—C3—H3119.6
O2i—Ni1—O494.17 (4)C4—C3—C2120.71 (13)
O2—Ni1—O4i94.17 (4)C4—C3—H3119.6
O2i—Ni1—O4i85.83 (4)C3—C4—C5120.60 (13)
O3i—Ni1—O3180.00 (5)C3—C4—H4119.7
O3—Ni1—O491.81 (4)C5—C4—H4119.7
O3i—Ni1—O488.19 (4)C4—C5—N1119.48 (13)
O3—Ni1—O4i88.19 (4)C6—C5—N1121.60 (13)
O3i—Ni1—O4i91.81 (4)C6—C5—C4118.84 (13)
O4—Ni1—O4i180.00 (5)C5—C6—H6119.9
C1—O2—Ni1128.50 (9)C7—C6—C5120.18 (13)
Ni1—O3—H31119.5 (15)C7—C6—H6119.9
Ni1—O3—H32115.3 (16)C2—C7—H7119.4
H31—O3—H32106.7 (19)C6—C7—C2121.11 (13)
Ni1—O4—H4196.8 (18)C6—C7—H7119.4
Ni1—O4—H42109.2 (15)N1—C8—H8A109.5
H42—O4—H41107 (2)N1—C8—H8B109.5
C5—N1—C8118.22 (12)N1—C8—H8C109.5
C5—N1—H1111.6 (14)H8A—C8—H8B109.5
C8—N1—H1113.0 (13)H8A—C8—H8C109.5
O1—C1—C2117.52 (12)H8B—C8—H8C109.5
O3—Ni1—O2—C198.00 (11)C7—C2—C1—O2−177.98 (12)
O3i—Ni1—O2—C1−82.00 (11)C1—C2—C3—C4−179.27 (12)
O4—Ni1—O2—C1−170.07 (12)C7—C2—C3—C40.1 (2)
O4i—Ni1—O2—C19.93 (12)C5—C4—C3—C20.0 (2)
Ni1—O2—C1—O1−2.6 (2)C3—C4—C5—N1−176.96 (13)
Ni1—O2—C1—C2176.51 (8)C3—C4—C5—C6−0.1 (2)
C8—N1—C5—C4−159.10 (13)C7—C6—C5—N1176.96 (13)
C8—N1—C5—C624.13 (19)C7—C6—C5—C40.2 (2)
C3—C2—C1—O1−179.47 (12)C6—C7—C2—C1179.34 (12)
C3—C2—C1—O21.36 (19)C6—C7—C2—C30.0 (2)
C7—C2—C1—O11.19 (19)C2—C7—C6—C5−0.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4ii0.85 (2)2.55 (2)3.3902 (16)170 (2)
O3—H31···N1iii0.91 (2)1.97 (2)2.8780 (16)172 (2)
O3—H32···O1iv0.87 (2)1.90 (2)2.7131 (15)155 (2)
O4—H41···O1i0.96 (2)1.68 (2)2.6240 (14)165 (3)
O4—H42···O1iv0.92 (2)2.11 (2)2.8781 (15)139 (2)
C8—H8A···O3v0.962.433.2583 (18)144
C8—H8C···O1vi0.962.473.4105 (19)168
Table 1

Selected bond lengths (Å)

Ni1—O22.0537 (10)
Ni1—O32.0662 (10)
Ni1—O42.0772 (10)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.85 (2)2.55 (2)3.3902 (16)170 (2)
O3—H31⋯N1ii0.91 (2)1.97 (2)2.8780 (16)172 (2)
O3—H32⋯O1iii0.87 (2)1.90 (2)2.7131 (15)155 (2)
O4—H41⋯O1iv0.96 (2)1.68 (2)2.6240 (14)165 (3)
O4—H42⋯O1iii0.92 (2)2.11 (2)2.8781 (15)139 (2)
C8—H8A⋯O3v0.962.433.2583 (18)144
C8—H8C⋯O1vi0.962.473.4105 (19)168

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diaqua-bis(N,N-diethyl-nicotinamide-κN)bis-(4-formyl-benzoato-κO)nickel(II).

Authors:  Mustafa Sertçelik; Barış Tercan; Ertan Sahin; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-25

3.  Diaqua-bis(2-chloro-benzoato-κO)bis-(N,N-diethyl-nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-22

4.  Diaqua-bis(2-chloro-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-31

5.  Diaqua-bis(4-methyl-benzoato-κO)bis-(nicotinamide-κN)nickel(II).

Authors:  Hacali Necefoğlu; Efdal Cimen; Barış Tercan; Emel Ermiş; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-03
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.