Literature DB >> 22904752

Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))cobalt(II).

Mustafa Sertçelik, Nagihan Caylak Delibaş, Hacali Necefoğlu, Tuncer Hökelek.   

Abstract

In the title complex, [Co(C(8)H(5)O(3))(2)(C(6)H(6)N(2)O)(2)(H(2)O)(2)], the Co(II) cation is located on an inversion center and is coordinated by two 4-formyl-benzoate (FB) anions, two nicotinamide (NA) ligands and two water mol-ecules. The four O atoms in the equatorial plane around the Co(II) cation form a slightly distorted square-planar arrangement, while the slightly distorted octa-hedral coordination is completed by the two N atoms of the NA ligands in the axial positions. The dihedral angle between the carboxyl-ate group and the adjacent benzene ring is 23.91 (9)°, while the pyridine and benzene rings are oriented at a dihedral angle of 88.84 (4)°. The coordinating water mol-ecule links with the carboxyl-ate group via an intra-molecular O-H⋯O hydrogen bond. In the crystal, N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds link the mol-ecules into a three-dimensional supra-molecular network. π-π stacking between the parallel benzene rings of adjacent mol-ecules [centroid-centroid distance = 3.8505 (8) Å] may further stabilize the structure. A weak C-H⋯π inter-action also occurs in the crystal.

Entities:  

Year:  2012        PMID: 22904752      PMCID: PMC3414145          DOI: 10.1107/S1600536812032205

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For literature on niacin, see: Krishnamachari (1974 ▶). For information on the nicotinic acid derivative N,N-diethyl­nicotinamide, see: Bigoli et al. (1972 ▶). For related structures, see: Aydın et al. (2012 ▶); Hökelek et al. (1996 ▶, 2009 ▶); Hökelek & Necefoğlu (1998 ▶, 2007 ▶); Necefoğlu et al. (2011 ▶); Sertçelik et al. (2012 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

[Co(C8H5O3)2(C6H6N2O)2(H2O)2] M = 637.46 Triclinic, a = 7.7784 (2) Å b = 9.7988 (3) Å c = 9.8970 (3) Å α = 78.080 (3)° β = 71.395 (2)° γ = 86.638 (4)° V = 699.48 (4) Å3 Z = 1 Mo Kα radiation μ = 0.68 mm−1 T = 100 K 0.33 × 0.17 × 0.10 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.808, T max = 0.937 12735 measured reflections 3527 independent reflections 3301 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.069 S = 1.05 3527 reflections 216 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812032205/xu5597sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812032205/xu5597Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C8H5O3)2(C6H6N2O)2(H2O)2]Z = 1
Mr = 637.46F(000) = 329
Triclinic, P1Dx = 1.513 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7784 (2) ÅCell parameters from 7533 reflections
b = 9.7988 (3) Åθ = 2.8–28.5°
c = 9.8970 (3) ŵ = 0.68 mm1
α = 78.080 (3)°T = 100 K
β = 71.395 (2)°Block, orange
γ = 86.638 (4)°0.33 × 0.17 × 0.10 mm
V = 699.48 (4) Å3
Bruker Kappa APEXII CCD area-detector diffractometer3527 independent reflections
Radiation source: fine-focus sealed tube3301 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
φ and ω scansθmax = 28.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −10→9
Tmin = 0.808, Tmax = 0.937k = −13→13
12735 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0309P)2 + 0.3387P] where P = (Fo2 + 2Fc2)/3
3527 reflections(Δ/σ)max < 0.001
216 parametersΔρmax = 0.42 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.00000.00000.01057 (7)
O10.12202 (11)0.18006 (9)0.01007 (10)0.01452 (18)
O2−0.11185 (12)0.27803 (9)0.15705 (10)0.01572 (18)
O30.49561 (15)0.66922 (13)0.31971 (16)0.0403 (3)
O4−0.43334 (12)0.00199 (10)−0.33497 (10)0.01763 (19)
O50.26433 (12)−0.08141 (10)−0.07947 (10)0.01505 (18)
H510.345 (3)−0.041 (2)−0.147 (2)0.029 (5)*
H520.236 (3)−0.151 (2)−0.110 (2)0.040 (5)*
N1−0.00257 (14)0.09276 (10)−0.21360 (11)0.0129 (2)
N2−0.32789 (16)0.13287 (12)−0.56018 (12)0.0176 (2)
H21−0.244 (3)0.1859 (19)−0.628 (2)0.028 (5)*
H22−0.413 (3)0.1007 (19)−0.584 (2)0.029 (5)*
C10.05487 (16)0.26423 (12)0.09348 (13)0.0123 (2)
C20.18468 (16)0.35171 (12)0.12577 (13)0.0126 (2)
C30.12393 (17)0.47283 (13)0.18014 (14)0.0168 (2)
H30.00670.50420.18770.020*
C40.23769 (17)0.54602 (13)0.22256 (15)0.0192 (3)
H40.19760.62700.25790.023*
C50.41275 (17)0.49803 (13)0.21208 (14)0.0170 (2)
C60.47496 (17)0.37952 (13)0.15538 (14)0.0166 (2)
H60.59270.34890.14690.020*
C70.36129 (16)0.30652 (12)0.11124 (14)0.0150 (2)
H70.40330.22780.07210.018*
C80.53655 (19)0.57111 (16)0.26075 (18)0.0256 (3)
H80.658 (2)0.5327 (18)0.2431 (19)0.026 (4)*
C9−0.14389 (16)0.06886 (12)−0.25570 (13)0.0130 (2)
H9−0.23890.0133−0.18910.016*
C10−0.15532 (16)0.12280 (12)−0.39347 (13)0.0128 (2)
C11−0.01388 (18)0.20716 (14)−0.49194 (14)0.0174 (2)
H11−0.01720.2454−0.58520.021*
C120.13220 (18)0.23343 (14)−0.44905 (14)0.0188 (3)
H120.22790.2900−0.51300.023*
C130.13331 (16)0.17428 (13)−0.30981 (14)0.0152 (2)
H130.23190.1916−0.28170.018*
C14−0.31771 (16)0.08278 (12)−0.42778 (13)0.0138 (2)
U11U22U33U12U13U23
Co10.00908 (11)0.01327 (11)0.01077 (12)−0.00042 (8)−0.00433 (8)−0.00344 (8)
O10.0133 (4)0.0159 (4)0.0150 (4)−0.0020 (3)−0.0039 (3)−0.0047 (3)
O20.0111 (4)0.0182 (4)0.0186 (4)−0.0011 (3)−0.0045 (3)−0.0052 (3)
O30.0230 (6)0.0454 (7)0.0642 (9)−0.0011 (5)−0.0124 (6)−0.0386 (7)
O40.0163 (4)0.0237 (5)0.0137 (4)−0.0062 (3)−0.0062 (3)−0.0015 (3)
O50.0115 (4)0.0177 (4)0.0162 (4)−0.0009 (3)−0.0036 (4)−0.0048 (4)
N10.0123 (5)0.0144 (5)0.0136 (5)−0.0006 (4)−0.0053 (4)−0.0036 (4)
N20.0176 (5)0.0237 (6)0.0132 (5)−0.0058 (4)−0.0077 (4)−0.0014 (4)
C10.0131 (5)0.0124 (5)0.0116 (5)−0.0020 (4)−0.0058 (4)0.0006 (4)
C20.0119 (5)0.0136 (5)0.0122 (5)−0.0022 (4)−0.0043 (4)−0.0011 (4)
C30.0116 (5)0.0168 (6)0.0225 (6)0.0009 (4)−0.0050 (5)−0.0058 (5)
C40.0150 (6)0.0163 (6)0.0276 (7)0.0000 (5)−0.0046 (5)−0.0104 (5)
C50.0141 (6)0.0180 (6)0.0202 (6)−0.0027 (4)−0.0052 (5)−0.0060 (5)
C60.0115 (5)0.0179 (6)0.0217 (6)0.0008 (4)−0.0064 (5)−0.0051 (5)
C70.0138 (6)0.0132 (5)0.0184 (6)0.0005 (4)−0.0049 (5)−0.0044 (4)
C80.0157 (6)0.0299 (7)0.0362 (8)−0.0023 (5)−0.0087 (6)−0.0159 (6)
C90.0121 (5)0.0142 (5)0.0136 (6)−0.0012 (4)−0.0049 (4)−0.0029 (4)
C100.0126 (5)0.0144 (5)0.0129 (5)0.0001 (4)−0.0054 (4)−0.0042 (4)
C110.0181 (6)0.0221 (6)0.0119 (6)−0.0033 (5)−0.0055 (5)−0.0009 (5)
C120.0157 (6)0.0222 (6)0.0167 (6)−0.0058 (5)−0.0038 (5)−0.0004 (5)
C130.0119 (5)0.0178 (6)0.0167 (6)−0.0018 (4)−0.0050 (5)−0.0041 (5)
C140.0139 (5)0.0160 (5)0.0138 (6)0.0001 (4)−0.0060 (4)−0.0050 (4)
Co1—O12.0864 (8)C3—C41.3819 (17)
Co1—O1i2.0864 (8)C3—H30.9300
Co1—O52.1254 (9)C4—H40.9300
Co1—O5i2.1254 (9)C5—C41.3932 (18)
Co1—N12.1276 (10)C5—C81.4804 (18)
Co1—N1i2.1276 (10)C6—C51.3884 (17)
O1—C11.2610 (14)C6—C71.3907 (17)
O2—C11.2608 (15)C6—H60.9300
O3—C81.2014 (18)C7—H70.9300
O4—C141.2391 (15)C8—H80.973 (18)
O5—H510.81 (2)C9—H90.9300
O5—H520.86 (2)C10—C91.3858 (17)
N1—C91.3415 (15)C10—C111.3904 (17)
N1—C131.3433 (15)C10—C141.5005 (16)
N2—C141.3267 (16)C11—C121.3873 (18)
N2—H210.870 (19)C11—H110.9300
N2—H220.861 (19)C12—H120.9300
C1—C21.5090 (16)C13—C121.3828 (18)
C2—C31.3990 (17)C13—H130.9300
C2—C71.3903 (17)
O1i—Co1—O1180.00 (2)C3—C4—C5119.70 (11)
O1—Co1—O587.96 (3)C3—C4—H4120.1
O1i—Co1—O592.04 (3)C5—C4—H4120.1
O1—Co1—O5i92.04 (3)C4—C5—C8121.27 (12)
O1i—Co1—O5i87.96 (3)C6—C5—C4120.33 (11)
O1—Co1—N189.61 (4)C6—C5—C8118.41 (12)
O1i—Co1—N190.39 (4)C5—C6—C7120.04 (11)
O1—Co1—N1i90.39 (4)C5—C6—H6120.0
O1i—Co1—N1i89.61 (4)C7—C6—H6120.0
O5i—Co1—O5180.0C2—C7—C6119.75 (11)
O5—Co1—N192.20 (4)C2—C7—H7120.1
O5i—Co1—N187.80 (4)C6—C7—H7120.1
O5—Co1—N1i87.80 (4)O3—C8—C5124.84 (13)
O5i—Co1—N1i92.20 (4)O3—C8—H8120.3 (10)
N1—Co1—N1i180.00 (6)C5—C8—H8114.8 (10)
C1—O1—Co1127.04 (8)N1—C9—C10123.26 (11)
Co1—O5—H51124.5 (13)N1—C9—H9118.4
Co1—O5—H5298.6 (14)C10—C9—H9118.4
H52—O5—H51104.8 (18)C9—C10—C11118.10 (11)
C9—N1—Co1119.37 (8)C9—C10—C14117.60 (11)
C9—N1—C13118.05 (11)C11—C10—C14124.27 (11)
C13—N1—Co1122.58 (8)C10—C11—H11120.5
C14—N2—H21123.1 (12)C12—C11—C10119.07 (12)
C14—N2—H22117.7 (12)C12—C11—H11120.5
H21—N2—H22118.5 (17)C11—C12—H12120.5
O1—C1—C2117.52 (10)C13—C12—C11119.01 (12)
O2—C1—O1125.58 (11)C13—C12—H12120.5
O2—C1—C2116.84 (10)N1—C13—C12122.50 (11)
C3—C2—C1120.06 (11)N1—C13—H13118.7
C7—C2—C1119.83 (11)C12—C13—H13118.7
C7—C2—C3119.96 (11)O4—C14—N2122.48 (11)
C2—C3—H3119.9O4—C14—C10119.74 (11)
C4—C3—C2120.18 (11)N2—C14—C10117.73 (11)
C4—C3—H3119.9
O5—Co1—O1—C1−153.43 (10)C1—C2—C3—C4173.96 (12)
O5i—Co1—O1—C126.57 (10)C7—C2—C3—C4−1.47 (19)
N1—Co1—O1—C1114.35 (10)C1—C2—C7—C6−173.32 (11)
N1i—Co1—O1—C1−65.65 (10)C3—C2—C7—C62.12 (19)
O1—Co1—N1—C9−143.16 (9)C2—C3—C4—C5−0.5 (2)
O1i—Co1—N1—C936.84 (9)C6—C5—C4—C31.9 (2)
O1—Co1—N1—C1337.41 (9)C8—C5—C4—C3−178.06 (13)
O1i—Co1—N1—C13−142.59 (9)C4—C5—C8—O34.7 (3)
O5—Co1—N1—C9128.90 (9)C6—C5—C8—O3−175.19 (16)
O5i—Co1—N1—C9−51.10 (9)C7—C6—C5—C4−1.2 (2)
O5—Co1—N1—C13−50.53 (10)C7—C6—C5—C8178.71 (13)
O5i—Co1—N1—C13129.47 (10)C5—C6—C7—C2−0.78 (19)
Co1—O1—C1—O2−20.75 (17)C11—C10—C9—N1−0.79 (18)
Co1—O1—C1—C2156.34 (8)C14—C10—C9—N1177.53 (11)
Co1—N1—C9—C10−178.76 (9)C9—C10—C11—C120.23 (18)
C13—N1—C9—C100.70 (18)C14—C10—C11—C12−177.97 (12)
Co1—N1—C13—C12179.38 (9)C9—C10—C14—O4−1.39 (17)
C9—N1—C13—C12−0.06 (18)C9—C10—C14—N2−179.18 (11)
O1—C1—C2—C3161.25 (11)C11—C10—C14—O4176.81 (12)
O1—C1—C2—C7−23.31 (17)C11—C10—C14—N2−0.97 (18)
O2—C1—C2—C3−21.40 (17)C10—C11—C12—C130.35 (19)
O2—C1—C2—C7154.03 (12)N1—C13—C12—C11−0.5 (2)
D—H···AD—HH···AD···AD—H···A
N2—H21···O2ii0.87 (2)2.078 (19)2.8834 (15)153 (2)
N2—H22···O4iii0.86 (2)2.04 (2)2.8908 (16)167 (2)
O5—H51···O4iv0.81 (2)2.08 (2)2.8583 (13)162.3 (19)
O5—H52···O2i0.87 (2)1.83 (2)2.6774 (14)164 (2)
C6—H6···O2iv0.932.393.3123 (17)172
C13—H13···O3v0.932.473.3120 (18)150
C4—H4···Cgvi0.932.723.6338 (14)167
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the pyridine ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H21⋯O2i 0.87 (2)2.078 (19)2.8834 (15)153 (2)
N2—H22⋯O4ii 0.86 (2)2.04 (2)2.8908 (16)167 (2)
O5—H51⋯O4iii 0.81 (2)2.08 (2)2.8583 (13)162.3 (19)
O5—H52⋯O2iv 0.87 (2)1.83 (2)2.6774 (14)164 (2)
C6—H6⋯O2iii 0.932.393.3123 (17)172
C13—H13⋯O3v 0.932.473.3120 (18)150
C4—H4⋯Cg vi 0.932.723.6338 (14)167

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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Authors:  Tuncer Hökelek; Hakan Dal; Barış Tercan; F Elif Ozbek; Hacali Necefoğlu
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7.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))nickel(II).

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8.  Diaqua-bis-(N,N-diethyl-nicotinamide-κN(1))bis-(4-formyl-benzoato-κO(1))zinc.

Authors:  Mustafa Sertçelik; Nagihan Caylak Delibaş; Hacali Necefoğlu; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-14

9.  Diaqua-bis-(2-iodo-benzoato-κO)bis-(nicotinamide-κN(1))cobalt(II).

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2.  Diaqua-bis-(4-formyl-benzoato-κO(1))bis-(nicotinamide-κN(1))zinc.

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